Xanthomonas oryzae pv. oryzae MAFF 311018: XOO0700
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Entry
XOO0700 CDS
T00360
Symbol
XOO0700
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xom
Xanthomonas oryzae pv. oryzae MAFF 311018
Pathway
xom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOO0700 (XOO0700)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xom03019
]
XOO0700 (XOO0700)
Enzymes [BR:
xom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XOO0700 (XOO0700)
Messenger RNA biogenesis [BR:
xom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XOO0700 (XOO0700)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
BAE67455
LinkDB
All DBs
Position
complement(752189..753571)
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AA seq
460 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSGGPRQANAGPGAGRRDGGRGGQRPSGTR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tatgaaacccccactgcaatccagcagcaggcgatcccgttggtgctggccggtcacgac
ctgctggccggcgcgcagaccggtaccggcaagaccgccgccttcggcctgccgctgctg
cagcacctgggcacctcgccgcagccggtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgaactggccacccaggtgcatgacagcctgcgcggctacagcaag
tacctgcgcattcccagcgcagtgatctacggcggcgtgggcatgggcaaccagctcgac
accctgcgccgtggcgtggacctgctgatcgcctgcccgggccggctgatcgatcatatc
gagcgccgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgaccgc
atgctcgacatgggcttcttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcagaccctgctgttctccgcgaccttcgaagagaacatcaagcagctggcgctg
gagttcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgatggcgcgcgcaagcgcgatctgctgctgcacctg
ctggcgcaggacagccgcgaacagaccctggtgttcgcgcgcaccaagcacggcagcgac
aagctggcgctgttcctggagaagtcgggcatcaagaccgcggccatccacggcaacaag
agccagggccagcgcatgcgtgccctgagcgacttcaaggccggccgcgtgaccgtgctg
gtcgccaccgatatcgctgcgcgcgggatcgatatcgaccagctgccgaaggtcatcaac
tacgacctgccgatggtggccgaggattacgtgcaccgcatcggccgcaccggccgtaac
ggctccaccggcgaggcgatctcgctggtggcgcaggacgaagccaagctgctgcgtcag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcag
acgccgatccgttggggcaacagcgcaccgggtcgcgccgagcagccgggcggcgatcgc
gccccgcgcaagagccacgcccgtcgcccgcatggcgatgcaccgcgtcaggcgcacgcg
catgccggcccgaagaagccgggtggccagcgcagcggcgggccgcgtcaggccaacgct
ggcccgggtgcaggccgtcgcgacggcggtcgcggtggtcagcgtccgagcggtacgcgc
taa
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