Xanthomonas oryzae pv. oryzae MAFF 311018: XOO3393
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Entry
XOO3393 CDS
T00360
Symbol
XOO3393
Name
(GenBank) RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xom
Xanthomonas oryzae pv. oryzae MAFF 311018
Pathway
xom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XOO3393 (XOO3393)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xom03021
]
XOO3393 (XOO3393)
03400 DNA repair and recombination proteins [BR:
xom03400
]
XOO3393 (XOO3393)
Enzymes [BR:
xom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XOO3393 (XOO3393)
Transcription machinery [BR:
xom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XOO3393 (XOO3393)
DNA repair and recombination proteins [BR:
xom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XOO3393 (XOO3393)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAE70148
UniProt:
Q2NZX9
LinkDB
All DBs
Position
complement(3848502..3852719)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVDAVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK
NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSM
NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLKERV
LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARC
YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSV
KFNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQSVA
NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAHAKELRPIV
RIVDGKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF
EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ
MLRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSE
METLSGKPAGAEPVAALADAGADEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgattcgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggtcacatcgatctggcctctccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggtttgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctacgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgg
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcttggaatcgggcaaccgtccggagtggatggtcatgacc
gtgcttcccgtgctgccgccggacctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctcggatctgaacgatttgtaccgccgcgtgatcaaccgcaacaaccgtctgcgc
cgcctgctcgagctcaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gagtcggtcgatgcgttactggacaacggccgtcggggccgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggcgaccaccatcaaggccgccaagaagctg
gttgagcgcgaagaagccgaagtctgggacatcctggaagaagtgatccgtgagcatccg
gtgctgttgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtaccgccttcaacgccgac
ttcgacggcgaccagatggctgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacatgagccgcgcgcttgagaacaag
aagggcgaaggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgt
gtggtcgaactgcacgccaaggtcaaggtccgcatcacccaggtggacgtggacgccgtc
gatggcaagcgcaccagcggcacctcgatcgtggacaccacggtcggtcgtgcgctgctg
agcgaaatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaag
aacatctcgcgtctgatcaactccagctaccgtctgctgggcttgaaggacacggtcgtg
ttcgccgacaagctgatgtacaccggctatgcctatgcaacccgtgccggcgtgtcgatc
ggtatcgacgacatgctgatcccggacgagaagaagggcatcctcaccgaggccgaagcc
gaagtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgctac
aacaaggtcgtggacatctggtcgcggaccagcgagcgcatcgccaaggcgatgatggac
accatcggtaccgaaaaggttgagaacgccaagggcgagaccatcgaccagaagtcgatg
aactcgctgtacatcatggccgactccggtgcgcgtggtagccaggcgcagatccgtcag
ctggccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatc
aaggcgaacttccgcgaaggtctgaacgtgcaggagtacttcaactccacccacggtgcc
cgtaagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacccgtcgt
ctggtcgacgtggcgcaggacgtggtgatcaccgaaatcgattgcggcaccaccgaaggg
ttgatcatgaccccgatcgtggaaggtggcgacgtggtggagccgttgaaggagcgcgtg
ctgggccgtgttgtggccgaggacgtctacctgccgggcaacgacgaagaaccgatcgtc
acccgcaacacgctgctcgacgaagcctgggtcgccaagctcgaagacgccagcgtgcag
tcggtgaaggtgcgttcgaccatcagctgcgaatcctccttcggcgtgtgtgcacgctgc
tacggtcgcgatctcgcacgtggtcaccaggtcaacatcggtgaagcggtcggcgtcatc
gccgcgcagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggt
ggtgcggcatcgcgtgcggctgcggtggacaacatcactgtcaagaccaccggttcggtg
aagttcaacaacctcaagtcggtggcgcatgccagtggctcgttggttgcggtctcgcgt
tctggcgaactgtccgtgctcgatggacatggccgcgagcgcgagcgttacaagctgccg
tacggcgccaccatcaccgccaaggacggcgatgcggtcaaggccggtcaaagcgttgcc
aactgggatccgcataaccacccgatcgtctcggaagtggccggtttcatccgtttcatc
gacttcgttgacggcgtcaccgtcatcgagaagaccgacgaactgaccggtctggcctcg
cgcgaaattaccgacccgaagcgtcgcggtgcgcatgccaaggaactgcgtccgatcgtg
cgtatcgtcgatggcaaggggaatgacctgacgatcccgaacacggatctgccggcgcag
tacttgctgccgccgcgctccattgtcaacctgcaggatggcgccgccgtcggcgtgggc
gacgtggtggcgaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctg
ccgcgcgttgccgacttgttcgaagcacgcaagccgaaggatccggcgatcctggccgag
cgctcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaaa
gacaccgatggttcggaacacgaagagctgatcccgaagtaccgccagatcatcgtgttc
gaaggcgagcacgtgactaagggcgagacggtggtggatggcgagccgagcccgcaggac
atcctgcgtctgctgggtgtcgaaccgctggccgcgtacctggtcaaggaaatccaggac
gtgtaccgcctgcaaggcgtgaagatcaacgacaagcacatcgaggtgatcactcgccag
atgctgcgtaaggtcgagatcgtcgatcagggcaacagcaaattcctcaacggcgagcag
gtcgagcgccagcgcgtcatcgaggaaaatgcccgcctggtcaagcgcaacgaactaccg
gccaagtacgatccggtgctgctgggtatcaccaaggcctcgcttgccaccgagtcgttc
atctcggcggcatcgttccaggagaccacccgcgtgttgaccgaggcggccgttcgcggc
acccgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgattccggcc
ggtaccggtctggcgtaccacgccggacgtcgcaaggcctcgggtctgaccgactcggaa
atggaaacgctgtcgggcaagccggcaggtgccgaaccggtcgcagctttggccgacgct
ggcgcggacgaggagtaa
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integrated database retrieval system
