Xanthomonas oryzae pv. oryzae MAFF 311018: XOO4004
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Entry
XOO4004 CDS
T00360
Symbol
XOO4004
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
xom
Xanthomonas oryzae pv. oryzae MAFF 311018
Pathway
xom03030
DNA replication
xom03410
Base excision repair
xom03420
Nucleotide excision repair
xom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XOO4004 (XOO4004)
03410 Base excision repair
XOO4004 (XOO4004)
03420 Nucleotide excision repair
XOO4004 (XOO4004)
03440 Homologous recombination
XOO4004 (XOO4004)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xom03032
]
XOO4004 (XOO4004)
03400 DNA repair and recombination proteins [BR:
xom03400
]
XOO4004 (XOO4004)
Enzymes [BR:
xom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XOO4004 (XOO4004)
DNA replication proteins [BR:
xom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XOO4004 (XOO4004)
DNA repair and recombination proteins [BR:
xom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
XOO4004 (XOO4004)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XOO4004 (XOO4004)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Glyco_hydro_32C
Motif
Other DBs
NCBI-ProteinID:
BAE70759
LinkDB
All DBs
Position
complement(4512847..4515648)
Genome browser
AA seq
933 aa
AA seq
DB search
MSRLVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKERPAYIAFVVDAPG
KTFRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAA
ADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLALMGD
TVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRELVTI
KTDVTLASGPRALDLREPNTETLAVLYARYGFTQALRELGGASAQSGLLSEPVALGAAAA
TARTEPGRARGTGFVSGPVNAAVDLDPALSAPGAYETILTQEQLDSWIAQLRAAGQFAFD
TETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHALAQLAPLLTDPAVR
KVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYED
VCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLAAEPGLERVYRDIEMPLVD
VLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELK
LPAVVKTPKGQPSTNEDALEAIADQHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRV
HTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMA
HLSGDPGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLAR
QLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQ
RAGAERAAINAPMQGTAADIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDT
LLSEVTTRMASAAELRVPLVVDSGVGDDWDQAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgagcagattagtcctgatcgacgggtccagttacctgtatcgcgcgttccacgcgctt
ccgccgctgaccaatgcgcagggcgaacccaccggcgccttgttcggcgtggtcaacatg
ctgcgcgccaccttgaaggaacgtccggcctacatcgccttcgtggtggatgcacccggc
aagaccttccgtgacgccttgtatgccgactacaaggccaaccggccgtcgatgcccgac
gacctgcgcgcgcaggtacagccgatgtgcgacatcgtgcatgcgctgggcatcgacatc
ctgcgcatcgacggcgtggaagccgacgatgtgatcggcacgctggcgctgcaggccgct
gccgatgggttgagcgtgaccatctccaccggcgacaaggactttgcccagctggtgcgc
ccgggtatcgaactggtcaacaccatgagcggcagccgcatggattcggacgcggcggtg
atcgccaagttcggcgtgcggcccgaccagatcgtcgacctgctggcgctgatgggcgac
accgtcgacaacgtacccggcgtggaaaaatgcggtcccaagactgccgccaaatggctt
gccgaatacgattcgctggacggcgtgatcgccaatgccgacaagatcaagggtaagatc
ggcgacaacctgcgcgctgcgttgccacgcctgccgctcaaccgtgagctggtcacgatc
aagaccgacgtgaccctggccagcggcccgcgcgcgctggatctgcgcgaacccaacacc
gaaacgctagcggtactgtacgcgcgctacgggttcacccaggcgctgcgcgagctgggc
ggcgcgtcggcgcagtccggtctgttgtccgagccggtggcgctgggcgctgccgctgct
accgcgcgcaccgagccgggccgtgcgcgcggcaccggcttcgtgtccgggccggtcaac
gcagcggtggacctggatccagcgctgtcggcgcccggcgcgtacgagaccatcctgacc
caggagcagctggacagctggatcgcgcagctgcgcgccgccggccagttcgctttcgat
accgaaaccgacagcctggacccgctgcaggccgacctgatcggcctgagcgtggccgcc
gagccaggtaaggcggcgtatctgccgttcggccacaactttcccggcgccccggttcag
ctcgaccgcacccacgcgctggcgcaactggcgccgctgctcaccgacccggccgtgcgc
aaagtcggccaacacggcaagtacgacctgcacgtgatgcgccggcatggcgtggagctt
gccggctacgccgacgacacactgctggagagcttcgtgctcaattccggcagcgcccgt
cacgacatggacagcctggccaagcgctatctcggctacgacaccgtcaagtacgaagac
gtttgcggcaagggcgccaagcagatcccgttcgcccagatcagcctggacgatgccacc
cgctacgccgccgaagacgccgacatcaccctgcgcctgcatcacgtgctcggccccaag
ctggcagccgagcccggcctggagcgcgtctaccgcgacatcgaaatgccactggtggac
gtgctggcgcgcatcgaagccaacggcgtgtgcgtggacgccgccgaactacgccgtcag
agcgcggacctgtccaagcgcatgctcgccgcccagcaaaaagccaccgagctggcaggg
cgcaccttcaacctggattcgcccaagcagctgcaggcgctgttgttcgacgagctcaag
ctccccgccgtggtcaagacgcccaagggccagccctcgaccaacgaagacgcgctggaa
gccatcgccgaccagcacgagctgccgcgggtgatcctggaataccgcggcctgagcaag
ctgcgcagtacctacaccgacaagctgccggagatgatccacccgcagtccggacgcgtg
cacaccagctaccaccaggccggcgccgccaccggtcggctgtcttcatcggacccgaac
ctgcagaacatcccgatccgcaccgaagacggccgccgcatccgccgcgctttcgtcgcc
ccgcccgggcgcaagctgatcgcctgcgactactcgcagatcgagctgcgcatcatggcc
cacctgtccggcgaccccggcctggtcggcgcgttcgcgtccggcaccgacgtgcaccgc
gccactgccgccgaagtattcggccgcaccatcgacaccgtcagcggtgacgagcgccgc
gctgccaaggcgatcaacttcggcctgatgtacggcatgagcgcgttcggtctggcccgc
cagctcggcatcggccgtggcgaagcgcaggactacatcgcgctgtacttcagccgctat
ccgggcgtgcgcgacttcatggaaaccacccgccagcaggcgcgcgacaagggctacgtg
gaaaccgtgttcggccgccgcctgtatctggatttcatcaatgccggcagccagggccag
cgtgcaggcgccgagcgcgccgccatcaacgcgccgatgcagggcaccgccgccgacatc
atcaagcgcgccatggtcaaggtggacggctggatcgccgaccacgcgcaacgcgccaaa
atgatcctgcaggtgcacgacgaactggtgttcgaagccgatgtcgatttcgtcgacaca
ctgctcagcgaagtcaccacgcgcatggcctccgcagctgaattgcgcgtgccgttggtg
gtggattcgggcgtgggcgatgactgggatcaggcgcactga
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