Xanthomonas oryzae pv. oryzae MAFF 311018: XOO4057
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Entry
XOO4057 CDS
T00360
Symbol
XOO4057
Name
(GenBank) conserved hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
xom
Xanthomonas oryzae pv. oryzae MAFF 311018
Pathway
xom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOO4057 (XOO4057)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xom03021
]
XOO4057 (XOO4057)
03019 Messenger RNA biogenesis [BR:
xom03019
]
XOO4057 (XOO4057)
Transcription machinery [BR:
xom03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
XOO4057 (XOO4057)
Messenger RNA biogenesis [BR:
xom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XOO4057 (XOO4057)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
OB_RNB
Mor
S1CSD-TOTE-2
Fungal_virus_P2_C
Spore_III_AA
AAA_22
ResIII
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
BAE70812
LinkDB
All DBs
Position
4575640..4576920
Genome browser
AA seq
426 aa
AA seq
DB search
MPEGFPVYSLSDLKRMPAQKLLDIADQLNIQEGVARARKQDVIFALLKVLTRHGEGVAAD
GVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFA
LSIVDTINGEPLEASKGKVLFENLTPLFPRRRFRLERGDGSTEDITGRILDLMAPQGKGQ
RALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRTVRGEVISSTF
DEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAN
ALHRPKRFFGAARNVEEGGSLTVIATALVETGSKMDEVIYEEFKGTGNSEVHLNRRITEK
RVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKTTKSNDEF
FSSMKR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtgccggaaggcttcccggtctattcgctgagcgatctcaagcggatgccggcgcagaag
ctgctggatatcgccgatcagctcaatatccaggaaggcgtggcgcgtgcgcgcaagcag
gacgtgatcttcgccctgctcaaggtgctcacccgtcatggcgaaggcgttgccgccgat
ggcgtgctggaaatcctgccggacggcttcggtttcctgcgtgctgcggaagccagctac
ctggccggcccggacgatacctatatttcgcccagccagatccgccgcttcaatctgcgc
accggcgaccatctgtccggccgcatccgcttcccgaaggacggcgaacgctatttcgcg
ctgtcgatcgtcgacaccatcaacggtgagccgctggaagcgagcaagggcaaagtgctg
ttcgagaacctgaccccgctgttcccgcgtcgccgcttccgtctggagcgtggcgatggc
tccaccgaggacatcaccggccgcatcctggatctgatggcgccgcagggtaagggtcag
cgtgcgctgatcgtctctccgcccaaggccggtaagacgatgatgatgcagcaggtggcc
acggccatcaccaccaatcaccccgaagtgcacatgatcgtgctgctcatcgacgagcgc
ccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaagtcatctcctccacgttc
gacgagccggctgcgcgccacgtgcaggtcgccgagatggtgatcgagcgggccaagcgc
ctggtcgagcacaagaaggacgtggtgatcctgctggactccatcacccgtctggcgcgc
gcctacaacaacgtggtgcccagctccggcaaggtgctcaccggtggtgtggacgccaat
gccctgcaccgcccgaaacgcttcttcggtgcggcgcggaacgtggaagaaggcggctcg
ctgaccgtcatcgcgacggcgctggtggaaaccggcagcaagatggacgaggtgatctac
gaagagttcaagggcaccggcaacagcgaagtgcatctgaaccgtcgcatcaccgaaaag
cgtgtgtacccggcaatcgacatcaaccgttcgggcacgcgccgcgaagacctgctgatc
gagccggagctgctgcagaagatctggatcctgcgcaagctgctgcacccgatggacgaa
atcgccgcgatggaattcctgctggacaagatgaagaccaccaagtccaacgacgagttc
ttcagttcgatgaagcgctga
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