Xanthomonas oryzae pv. oryzae KACC 10331: XOO0770
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Entry
XOO0770 CDS
T00235
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Pathway
xoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOO0770 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoo03019
]
XOO0770 (rhlE)
Enzymes [BR:
xoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XOO0770 (rhlE)
Messenger RNA biogenesis [BR:
xoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XOO0770 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
AAW74024
UniProt:
Q5H4U6
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All DBs
Position
complement(783828..785282)
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AA seq
484 aa
AA seq
DB search
MLLHLQCVCAPGLAWWRRFTWSFLMSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVL
AGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLR
GYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILD
EADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNT
VAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAI
HGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGR
TGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQP
GGDRAPRKSHARRPHGDAPRQAHAHAGPKKPGGQRSGGPRQANAGPGAGRRDGGRGGQRP
SGTR
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
ttgcttttgcatctgcaatgcgtttgcgctccgggcctggcttggtggcgacgctttacc
tggagcttcctgatgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttg
gccgagcagggctatgaaacccccactgcaatccagcagcaggcgatcccgttggtgctg
gccggtcacgacctgctggccggcgcgcagaccggtaccggcaagaccgccgccttcggc
ctgccgctgctgcagcacctgggcacctcgccgcagccggtcaacggcccgcgcaagccg
cgcgcgctgatcctgacccccacccgcgaactggccacccaggtgcatgacagcctgcgc
ggctacagcaagtacctgcgcattcccagcgcagtgatctacggcggcgtgggcatgggc
aaccagctcgacaccctgcgccgtggcgtggacctgctgatcgcctgcccgggccggctg
atcgatcatatcgagcgccgcagcgtggacctgtccggcatcgaagtgctgatcctggac
gaagccgaccgcatgctcgacatgggcttcttgccgtcgatcaagcgcatcctgaccaag
ctgccgcgccaggaccgtcagaccctgctgttctccgcgaccttcgaagagaacatcaag
cagctggcgctggagttcatgcgcaacccgatgcagatccaggtcaccccgagcaacacc
gtggccgagagcatcacccaccgcgtgcacccggtcgatggcgcgcgcaagcgcgatctg
ctgctgcacctgctggcgcaggacagccgcgaacagaccctggtgttcgcgcgcaccaag
cacggcagcgacaagctggcgctgttcctggagaagtcgggcatcaagaccgcggccatc
cacggcaacaagagccagggccagcgcatgcgtgccctgagcgacttcaaggccggccgc
gtgaccgtgctggtcgccaccgatatcgctgcgcgcgggatcgatatcgaccagctgccg
aaggtcatcaactacgacctgccgatggtggccgaggattacgtgcaccgcatcggccgc
accggccgtaacggctccaccggcgaggcgatctcgctggtggcgcaggacgaagccaag
ctgctgcgtcagatcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggc
tacgagccgcagacgccgatccgttggggcaacagcgcaccgggtcgcgccgagcagccg
ggcggcgatcgcgccccgcgcaagagccacgcccgtcgcccgcatggcgatgcaccgcgt
caggcgcacgcgcatgccggcccgaagaagccgggtggccagcgcagcggcgggccgcgt
caggccaacgctggcccgggtgcaggccgtcgcgacggcggtcgcggtggtcagcgtccg
agcggtacgcgctaa
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