Xanthomonas oryzae pv. oryzae KACC 10331: XOO1078
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Entry
XOO1078 CDS
T00235
Symbol
rhgB
Name
(GenBank) rhamnogalacturonase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
XOO1078 (rhgB)
Enzymes [BR:
xoo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
XOO1078 (rhgB)
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Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
PapC_N
Motif
Other DBs
NCBI-ProteinID:
AAW74332
UniProt:
Q5H3Y9
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All DBs
Position
complement(1102013..1103716)
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AA seq
567 aa
AA seq
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MLEVRTVRTFSVSDARLASRAGIATKSCFRTVTTMPRHRLHTFACALLLYAGVSAPALAE
FGCTRSGDRVIVDSGAELVFSVDTHDGDIVSMRYRDNELQTTEPKGSQIASGLGSASVDA
RIAGGTIIVSAKAGDLIQYYIVRKGRNAIYMATYAPTLPPVGELRFVARLNVSKLPDAQQ
EPDSNVGTAIEGNDVFLLPDGRTSSKFYSARRMMDDQVHGVSGPGVAVFMLMGNREHSAG
GPFFKDIATQKTRVTHELYNYMYSDHTQTEAFRGGLHGVYGLLFTDGSAPSDAQLNTDFV
DATLGLSDYLPASGRGAVGGQVSGVLPDQPAVIGLCNAQAQYWATADGSGEYQVTGVRPG
RYRMTLYQNELEVAWRDIEVFANDTAHATLQAVALPGTLKWQIGIPDGTPAGFGYADLLP
HAHPSDARMRWSATTYTVGSSGQSSFPAVQWRGINTPSRIDFTLAADEVRDYRLRIFVPL
AQGSARPQISVNARWNGPMPDAPLQPKTRGITRGTTRGNNALYEMDIPASALQAGSNCIE
IGIASGSPDNGFLSPAIVFDSIQLVAL
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
ttgctggaagttcgaacagtgcgcacgttctctgtctccgacgctcgcctagcatcgcgc
gcaggcatcgcaaccaagtcctgcttccgcacggtaaccaccatgccgcgtcatcgcctg
cacaccttcgcctgcgcgctgttgctctatgccggcgtcagcgcacctgcactggccgaa
ttcgggtgcacccgcagtggcgaccgcgtgattgtcgacagtggcgccgagctggtgttt
tcggtcgatacacacgatggcgatatcgtgtcgatgcgctatcgcgacaacgaactgcag
accaccgaaccgaagggttcgcagatcgcttcggggctgggcagcgccagcgtggacgca
cgcatcgcgggtggaacgatcatcgtgtccgccaaggccggcgatctgatccagtactac
atcgtgcgcaagggccgcaacgcgatctacatggccacgtatgcgccaacgttgccacca
gtgggcgaattgcgcttcgtggcccgcttgaatgtgtccaagttgccggatgcgcagcag
gaacccgattccaatgtcggcacagcgatcgaaggcaacgatgtctttttgttgccggat
gggcgcaccagttccaaattctattccgcacgccgaatgatggacgaccaggtgcatggc
gtcagcggccccggcgttgcagtgttcatgctgatgggcaaccgcgagcacagcgcgggt
gggccgttcttcaaggacatcgccacgcaaaagactcgtgtgacacatgaactctacaac
tacatgtattccgaccacacccagaccgaagcatttcgtggcggtctgcatggtgtgtac
gggttgttgttcaccgatggcagcgcgccatccgatgcgcagctcaacaccgatttcgtc
gatgccacgctgggtctgagcgattatttgccggcaagcgggcgcggtgcagtcggcggg
caagtgagcggcgtgctgcccgaccagccagcagttatcggtctgtgcaacgcgcaggcg
caatactgggccaccgcggacggcagtggcgagtatcaggtgacaggtgtgcgcccgggc
agatatcgcatgacgctctaccagaacgaactggaagtcgcatggcgcgatatcgaagtg
tttgccaacgacacagcacacgccacacttcaggcggtcgccttaccgggcacgctgaag
tggcagatcggcattcccgatggcacgccggcggggttcggatacgcggacctgctaccg
catgcgcacccttccgatgcgcgcatgcgctggtctgcgacgacgtacaccgtcgggtcg
agcggccagagcagctttcccgcggtgcagtggcgcggtatcaacaccccgagccggatc
gacttcaccctggccgccgacgaggtacgcgactatcgcctgcgcatcttcgtgccgttg
gcgcagggcagtgcacgcccgcagatcagcgtgaatgcccgctggaatgggccgatgcct
gacgcccctctgcagccgaagacacgcggcatcacgcgcggcacgacgcgtggcaacaac
gccctgtacgagatggacattcccgcatctgctttgcaggccggcagtaactgcatcgag
atcggcattgcctccggctccccggacaacggcttcctcagcccggcaatcgtgtttgac
agcatccaactggtggcgttgtag
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