Xanthomonas oryzae pv. oryzae KACC 10331: XOO1725
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Entry
XOO1725 CDS
T00235
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoo03019
]
XOO1725 (hrpA)
Enzymes [BR:
xoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XOO1725 (hrpA)
Messenger RNA biogenesis [BR:
xoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XOO1725 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_30
SRP54
ResIII
NACHT
Cas3-like_C_2
AAA_23
T2SSE
AAA_25
ABC_tran
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AAW74979
UniProt:
Q5H242
LinkDB
All DBs
Position
1786742..1790863
Genome browser
AA seq
1373 aa
AA seq
DB search
MSAIDSDLANTLRERRRAVDGAMSHDRGRLLGLWSRWQGKPGNPQVRDAFEQALAASQAQ
RQARAEQQPAITLDNQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVAEELKTPLGTIVGFQVRFTDRVSEQSRIKFMTDGILLA
EIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQH
FDNAPVINVEGRTFPVEVRYRPLEGDTGDSDDGEHSSGRDGERSVNDAIVAAIDEITRID
PRGDVLMFLPGEREIRDAHQALERRKYRETEVVPLYARLSAADQDRVFNPGPRRRLVLAT
NVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGIC
YRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQ
LLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAFLGIQDPRER
PAEAREAADNAHALFADVRSEFVGILRLWDAYRQVHEDLTQSKLRDWCNRHFLGFLRMRE
WRELHRQLRLLCEELGWSEEPANVMLAPLLAGASAPAREDGHNANRPTRGQLHRAARLAR
EGKPDPNTAPVQHPPAATNKQAEPAEASALSSERERAAAYQSLHRALLAGLPTQIGHRTE
KGDYLAARQRRFVPFPGSALARKPPPWIVAATLLDTQKVWGMTNAAIEPDWAIAELPHLL
ARKHFDAHWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPAAAHDLFVRQGLVTGEIN
TRAAFVADNLKVLEQAREEEAKLRRAGIVADEDWQARWYLDRIPAELHSASGLDAWWKSL
PPDKRRSLHWSLNDVLPGEGCEADRFPKYFPLGDARLPLHYRFEPGAIDDGVTLDVALHL
LNALDPARLSWLAPGFVADKASALIRSLPKAQRRNYVPAPDFGRAFYEAFNVASADDIRG
ELARFLTKATGTHVAALDFDEQALDTHLLMNLRVRDDDGKVLDESRDLDGLRARFGERAG
QAFAARAGRALVAEGLRDFPTAPIPEQVAGEAGVPAYPALVDQGDNAALRIFADRNEAAR
AHPRGVRRLLEVALADKIKQARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLADG
LGAIRDPGAFAQRRDDAIKRLFGEAMERLTLAESILGAVAELKPLLEAPLMGWARGNLDD
MEQQLRALVHAGFLRDTPADALANYPRYLRAMILRTERAKRDPARDQARMLELKPFVDAV
EAAAAHGLQNREDWQALRWDLEELRVSVFAQELGAKSGVSAKKLSQRVAALRS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgactccgaccttgccaacaccttgcgtgagcgccgccgcgccgtggat
ggcgcgatgagccacgaccgtggccgcttgctgggcctatggtcgcgctggcagggcaag
ccgggcaacccgcaggtacgcgatgcgttcgagcaggcgctggcggcatcgcaggcgcag
cgccaggcgcgggccgagcagcagccggccatcacgctggacaaccaattgccgatcgcg
cgcgaggccgagcgtatcatcgcgttgatccgtgatcatcaagtggtggtcatcgccggc
gaaaccggctcgggcaagaccacccagctgcccaagctgtgtctggcggcagggcgcggg
gccgccgggatgatcggttgcactcagccgcgccggatcgccgcgcgtgcggtggctgcg
cgcgtggcggaagagttgaagacgccactaggtaccatcgttggcttccaggtgcgcttc
actgaccgggtcagcgagcagtcgcgcatcaagttcatgaccgacggcatcctgttggcg
gaaatcgccagcgaccgttggctgtcggcctacgacaccatcatcgtggacgaggcgcac
gagcgcagcctcaacatcgatttcctgctgggctatctcaaacagttgctgcacaagcgc
tccgatctcaagttgatcgtcacctcggccaccatcgataccgagcgcttcgcacagcat
ttcgacaatgcgccggtgatcaatgtggaaggccgcaccttcccggtcgaagtgcgctac
cgcccgctcgaaggcgatacgggcgacagcgacgacggcgaacacagcagcggccgcgac
ggcgagcgcagcgtcaacgatgcgattgtggcggccatcgacgagattacccgcatcgac
ccgcgcggcgatgtgctgatgttcctgccgggcgagcgcgaaattcgcgatgcgcaccag
gcgttggaacggcgcaaataccgagagaccgaagtggtgccgttgtacgcgcggctgtcg
gcggccgatcaggaccgcgtgttcaatcccggcccgcggcgacgcctggtgctggccaca
aacgtggccgaaacctcgttgaccgtgccgcgcattcgctatgtggtggatccggggctt
gcacgcgtcaaacgctacagtccgcgccagaagctggaccgtctgcatatcgagccgatc
tcgcaggccagcgccaaccagcgcatgggccgctgtgggcgtatcgccgagggcatttgc
taccggctgtatgccgaagcggattttgccgcgcgcccggcgtttaccgacccggagatc
cggcgctcgtcgttgtccggcgtgatcctgcgcatgctgcagctggggctgggcagaatc
gaagacttcccgttcctggaagcgcccgacgaacgcgcggtggccgatggctggcaacag
ctgctggagttgggcgcgatcgatgcgcagcggcgtctgaccgccactggccgccagatg
gcgcgcctgccggtggacgtcaagctggcgcgcatgctggtggccgcccagcagcacggt
tgtctgcgcgagatgatcatcatcgccgcattcttgggcatccaggacccgcgcgagcgc
ccggcggaagcgcgcgaggctgccgataacgcgcacgcgctgtttgccgatgtgcgctct
gaattcgtgggcatcctgcgcttgtgggatgcgtaccggcaggtgcatgaagatctcacc
cagtccaagttgcgcgactggtgcaaccggcatttcctcggctttttgcgcatgcgcgag
tggcgcgagttgcatcgacagctgcggctgctgtgcgaggagctcggctggagcgaagaa
ccggccaatgtgatgctggcgccattgctggccggtgccagcgcgcctgcccgcgaggac
ggccataacgccaaccggcccacgcgcggccagttgcaccgtgccgcgcgactggcgcgc
gaaggcaagccggatccgaacacggcgcctgtgcaacacccgcctgctgcgacgaacaag
caggccgagcctgccgaagcatctgcgcttagcagcgagcgcgaacgtgcggcggcgtat
cagtcgttgcatcgcgcgctgctggcgggcctgccgacgcagatcggtcatcgcaccgag
aagggcgattatctggctgcgcggcaacgccgcttcgtgccgtttccgggctccgcattg
gcgcgcaagccgccgccttggattgtggctgccacgttgctggacacgcaaaaagtatgg
ggcatgaccaatgccgcgatcgagccggattgggccatcgccgagctgccgcatctgctg
gcgcgcaagcacttcgacgcgcattggtcgcgtgcgcaggggcaggtggtggcgtcggaa
cagatcagcctgttcgggctggtgctggcgccgaaaaagccggtgcatttcggcaagatc
gacccagccgcggcgcatgacctgttcgtgcgccaaggcctggtgaccggcgaaatcaac
acgcgtgccgcattcgtggccgacaatctcaaggtgctagagcaggcgcgtgaagaggag
gccaagctgcgtcgcgccggcatcgttgccgacgaagactggcaggcgcgctggtatctg
gatcgcattccagccgagctgcattcggccagtggtctggatgcttggtggaagagcttg
ccgccagacaagcgccgcagcctgcattggtcgttgaacgatgtgctgccgggcgagggc
tgcgaagccgatcgctttccgaaatatttcccactcggcgatgcgcgcttgccgttgcat
taccgcttcgagccgggggccatcgacgacggcgtgaccctggatgtggcgttgcacctg
ctcaatgcgctggatccggcgcgcctgtcgtggctggcgccgggcttcgtcgccgacaag
gcatctgcgttgattcgcagcctgcccaaggcgcagcgccgcaactatgtgccggcaccg
gatttcggacgtgcgttctacgaggcgtttaacgttgcctcggccgacgatatccgcggc
gagctggcgcgctttctgaccaaggccaccggtacgcatgtggcagcgctggatttcgat
gagcaggcgctggacacgcatttgctgatgaacctgcgcgtgcgcgacgacgacggcaag
gtgctggacgagtcgcgcgatctggacgggctgcgcgcgcgctttggcgagcgtgccggg
caagcattcgccgcgcgggccggacgcgcgctggtcgccgagggcctgcgtgattttccg
acagcgccgattcccgagcaggtggccggcgaggccggcgtgccggcgtacccggcgctg
gtggatcagggcgacaacgcggcgctacgcatcttcgccgaccgcaacgaggctgcgcgg
gcgcatccgcgcggcgtgcggcgcttgctggaagtcgcattggccgacaagatcaaacag
gcgcgcaagcaactgccggtgtcgcccaagaccgggctgctgtatgcggccatcgaatcg
caggaacgcctgcgtggcgatctggtcgatgccgcgctcaatgccgtgctggccgatggc
ctgggcgccattcgcgaccccggcgcattcgcgcagcgccgcgacgatgcgatcaagcgg
ctgttcggcgaagcgatggagcgcttgacgctggccgaaagcatcctgggcgcggtggcc
gaactcaagccgttgctggaagcgccgttgatgggctgggcgcgcggtaatctggacgac
atggagcagcaactgcgcgcgctggtgcatgcaggcttcctgcgcgacacgccggccgac
gcattggccaattatccgcgctacctcagggcgatgatcctgcgcaccgagcgcgcaaag
cgcgatccggcacgcgaccaggcgcgcatgctcgagctcaaaccgttcgtggatgcagtg
gaagccgccgccgcgcacggtttgcagaaccgcgaagactggcaagcgctgcgctgggat
ctggaagaactgcgcgtgtcggtgtttgcgcaggagctgggtgcaaagtccggcgtctcg
gcgaaaaaactgtcgcaacgtgtcgctgcactgcgcagttga
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