Xanthomonas oryzae pv. oryzae KACC 10331: XOO1903
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Entry
XOO1903 CDS
T00235
Symbol
LigT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xoo03016
]
XOO1903 (LigT)
Enzymes [BR:
xoo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
XOO1903 (LigT)
Transfer RNA biogenesis [BR:
xoo03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
XOO1903 (LigT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
OGG
Motif
Other DBs
NCBI-ProteinID:
AAW75157
UniProt:
Q5H1L4
LinkDB
All DBs
Position
2006608..2007351
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AA seq
247 aa
AA seq
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MQQPQFHAWQQVLRRRRPRRRIRHMAGLLVSAAILKQARVAWSWHPPMKQQFLYLSSAQA
QLSLGLGDEKTTERLFFAVMADAPTAEQAARIADSLLQGGHAEGKPLARERLHVTLHHLG
DYAGGLPPSLVSRATQAAARVAMDAFAVEFDRVGTFGGRRSQLPCVLRGEEQVRGLYALQ
GALGTQLAHVGIAGDAQYTPHMTLLYCNQAVPQRRCDALAWTVRDFALVRSFLGQSRYQI
EGRWSLR
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaccgcagttccacgcatggcaacaggttctacgtcgacggcgcccgcgccgg
cgtattcggcatatggcgggtctgctagtatccgccgctattctcaagcaggcccgcgtt
gcgtggtcgtggcatccacccatgaagcaacagttcctgtacctatcgtcggcccaagcg
cagttgtcgcttgggcttggggatgagaagaccactgaacgcctgttttttgcggtgatg
gccgatgcgcccacggccgagcaggcggcgcggattgccgacagcctgctgcaaggcggg
cacgcggaaggcaagccacttgcgcgcgaacggctgcatgtgaccttgcatcatttgggc
gattacgccggtggtttgccgccatcgttggtaagccgcgccactcaggccgcggcgcgc
gtcgcaatggatgcgttcgcagtggaattcgaccgcgtcggcaccttcggtggcaggcgc
tcgcaacttccctgcgtgttgcgtggcgaagagcaggtacgtgggctctacgcgctgcaa
ggcgcattgggaacgcagcttgcgcatgtcggtattgccggcgatgcgcagtacacgcca
cacatgacgctgctgtactgcaatcaggcggtgccgcaacgacgctgcgatgcgcttgcc
tggacggtgcgcgactttgcgctggtgcgcagctttcttggccagtcgcgttatcagatc
gaaggccgctggtcgctgcgctga
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