Xanthomonas oryzae pv. oryzae KACC 10331: XOO1962
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Entry
XOO1962 CDS
T00235
Symbol
dnaE1
Name
(GenBank) DNA polymerase III alpha chain
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Pathway
xoo03030
DNA replication
xoo03430
Mismatch repair
xoo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XOO1962 (dnaE1)
03430 Mismatch repair
XOO1962 (dnaE1)
03440 Homologous recombination
XOO1962 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xoo03032
]
XOO1962 (dnaE1)
03400 DNA repair and recombination proteins [BR:
xoo03400
]
XOO1962 (dnaE1)
Enzymes [BR:
xoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XOO1962 (dnaE1)
DNA replication proteins [BR:
xoo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XOO1962 (dnaE1)
DNA repair and recombination proteins [BR:
xoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XOO1962 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AAW75216
UniProt:
Q5H1F5
LinkDB
All DBs
Position
complement(2059655..2063620)
Genome browser
AA seq
1321 aa
AA seq
DB search
MLRTGPACQDAEGRRPRNPPRPAKTDRLPPANCLLQSGAITAVSRARHRAVEGTHRSTRT
GPTFTDTPGRRPTAVSQSPGVKRFTQMLAPRSRLRGVGPLPPPQLSSLVRPRPRRYPDSA
LFRSRMSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAV
TDLNNLFALVKFYKAAEGVGIKPIAGADVMIATPDMTPWRMTLLCRDREGYLSLSRLLTR
AWMEGHRPEGGVAIHPEWLQAGHANLFALAGRDSLAGRLFSEGRADLAEQQLADWQRVFG
DGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEARVCISSGR
VLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFLPAYPV
PDDETLDSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTIINMGFPGYFLIVA
DFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDID
FCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPN
ILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIA
PEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINV
RHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLKDARPDRFEDLIA
LVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQEQVMQMAQIVGDY
SLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLMEKFAGYGFNKSH
AAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVKPPRVNESA
YMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTRVGTTKLNRRTLE
AMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAPAMRLDLPE
SKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKILASQQRGAGGGGG
DGEKRAWRPEVSAILAGQVIGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRD
RILIVKGGLREDEFNGGYSLRIRQCWDYEQICADHAQRLSLRLDLREKQAFKRIDALLAK
HRPGKTPLRLDLLLRAQSGGVAGMLDLNGSHSVRIDQQLMDSLRADPAVRTLKIKYSPPW
A
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
gtgttgcgcaccggacctgcctgtcaggacgcagaaggccgccggccgcgcaatccgcca
agaccggcgaaaacggatcgcttgccccccgcaaactgcctgttgcagtcgggagcgata
acagccgtaagtcgggcaaggcaccgcgccgttgaaggcacgcaccgttccacccgcacc
ggcccgacattcacagacacgcccggacgcaggcccacagcggtatctcagagcccgggc
gtcaagcgatttacccagatgttggcaccacgctctcggctccggggtgtcggcccgctc
ccgccgccccagctgtcaagccttgtccgtccccgcccccgccggtaccctgacagcgca
ttattccggtctcgcatgtccacttcccgcttcgtccatctgcacgtccacaccgagttc
tcgctggcggattccactatccgtgtgcccgagaaaccggatcaggctgacccgaaaaag
gccaagcaggccaacctgctgagccgggccgtcgaaatcgacatgcccgcgttggcggtc
accgacctcaacaacctgttcgcactggtcaagttctacaaggccgccgaaggcgtgggc
atcaagccgatcgccggcgccgacgtgatgatcgccacaccggacatgacgccctggcgc
atgaccctgctgtgccgcgaccgggagggctacctgagcctgtcgcggctgctcacccgc
gcctggatggaaggccaccgcccggaaggcggcgtggcgatccatccggaatggctgcag
gccggccacgccaacctgtttgcgctggccggccgcgacagcttggccgggcgtttgttc
agcgaaggccgcgccgacctggccgagcaacaactggccgactggcagcgcgtgttcggc
gacggcctgcacctggaactcacccgcaccggtcgcgagtgcgaagaacgcttcaaccag
ttcgcgctcaacgcagcgggcgtacgcgggctgccggtcgtggccagtaatgacgtgcgg
tttttatatgcaagcgacttcaacgcacacgaagcgcgcgtgtgcatttcctcgggccgc
gtgctcgacgaccccaagcgcccgcgcgactacagcgaccagcagtacctgaaatccagc
gaggagatggcggcattgttcgccgacatccccgacgcgatcgacaacacccacgcgctg
gcgcaacgctgcaacatcgagatgcgcctgggcacctacttcctgcccgcctacccggtg
ccggacgacgagacgctggacagctggatccgcagccaatcgcgcgacggtctggccgca
cgtctggaaaaaagcccgattgcaccgggcaagacgcgccaggactacgtggaccggctc
gaattcgagctggacaccatcatcaacatgggcttccctggctactttctgatcgtggcc
gacttcatccagtggggcaagaaccagggcattccgatcggcccagggcgtggctccggt
gccggctcgctggtggcctgggcgctgcagatcaccgatctggacccgctgccgtacaac
ctgctgttcgagcgcttcttgaaccccgagcgcgtgtcgatgcccgacttcgacatcgac
ttctgcatggaccgccgcgacgaagtcatcgactacgtggcacgcaagtacggccgcgag
cgcgtcagccagatcatcacctacggcaccatggccgccaaggcggtggtgcgcgatgcc
gggcgcgtactcggtttcacctatggtctggtcgacagcgtcgccaagctgatccccaac
atcctgggcatcacgctcaaggatgcgatgggcgaaggcaaggattcggagatggcctcg
ccggaactgatccagcgctaccaggtcgaagacgacgtgcgcgacctgatggacctggcg
cgccagctcgaagacctcacccgcaacgccggcaagcacgccggcggcgtggtgatcgcg
cccgagccgctgagcgaattctgcccgctgttcgccgaacacgacgaagacggccgcggc
aagaatccggtcacccagttcgacaaggacgacgtcgaagcggtgggcctggtgaagttc
gacttcctcggcctgcgcacgctgaccatcatcgattgggcggtcaaggcgatcaacgtg
cgccacgcacgcgccggcatcgacccggtcgacatcaccaccattccgctcgacgacgtg
cccacctacaagggcgtgttcgccttgggcaacaccggcgcggtgttccagttcgaatcc
tcgggcatgcgccgcctgctcaaggacgcgcgcccggaccgcttcgaagacctgatcgcg
ctggtgtcgctgtaccgccccggcccgatggacctgatcccggacttcaacgcgcgcaag
catggccagcaggagatcgtctatcccgacccgcgcaccgaagtcatcctgaaagacacc
tacggcatcatggtgtatcaggagcaggtgatgcagatggcgcagatcgtcggcgattac
tcgctgggcggcgccgacctgttgcgtcgtgcaatgggcaagaaggtgccggccgaaatg
gccaagcaccgcgaaatcttccgcgaaggtgcggccaagggcggcgtcagcgcggccaag
gccgacgaaatcttcgacttgatggagaagttcgccggctacggcttcaacaagtcgcac
gcggccgcctatgcgctggtcagctatcagaccgcatggctgaaacggcattacccggcc
gaattcatggccgcgacgctgtcctcggacatggacaacaccgacaaggtggtcggcttt
ctcgatgaggtacgcaacctcggcctcaccgtcaagccgccacgcgtcaacgaatcggcc
tacatgttcgaggcggccagcccggacaccattcaatacggcctgggcgcgatcaagggc
gtcggccagggcgcgtgcgaggcgatcgtcgaagaacgccagcgcggtggcccctacacc
acgctgctggatttctgcacgcgcgtgggcaccaccaagctcaatcggcgcacgctggaa
gcgatgatcaatgccggcgcgatggatgggctgggcaagaaccgcgcttcgctgatgctg
cagttgcccgaagtgatgaaggccaccgagcagatggcgcgcgaacgcgcctcggggcag
aactcgctgttcggcggtccggacccgagcgcgccggcaatgcgcctggacctgcccgaa
agcaaggaatggccgctgggccagctgctcaccagcgagcgcgaaacgctgggcttctac
ctcagcggccacccgttcgacccgcaccgcgaagaagtgcgcgagctggtcggctgcgac
ctgggcgcgctggaaaagatcctcgcgtcgcaacaacgtggcgccggtgggggcggcggc
gatggcgaaaaacgcgcctggcgtcctgaagtgagcgccattcttgccggccaggtgatc
ggcgtgcgccgcaagggcgacagccaggtgttcgtgcaattggaagacggccgtggccgg
gtcgaatgcagcgcgttctccgatgcgatggccgagttcggccacctgctgacccgcgac
cgcatcctgatcgtcaagggcggcctgcgcgaggacgaattcaacggcggctacagcctg
cgcatccgccagtgctgggactacgagcagatctgcgccgaccacgcgcagcgcctgtcg
ctgcgtctggatctgcgcgaaaaacaggccttcaagcgcatcgacgcgctgctggccaag
caccgccccggcaagactcccttgcgcctggacctgttgctacgtgcccagagcggtggc
gtggccggcatgctcgacctcaacggcagccactcggtgcgcatcgaccagcagctcatg
gacagcctgcgcgccgaccccgcggtgcggacgttgaagatcaagtacagcccaccgtgg
gcgtga
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integrated database retrieval system
