Xanthomonas oryzae pv. oryzae KACC 10331: XOO2430
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Entry
XOO2430 CDS
T00235
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Pathway
xoo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
XOO2430 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xoo03400
]
XOO2430 (sbcB)
Enzymes [BR:
xoo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
XOO2430 (sbcB)
DNA repair and recombination proteins [BR:
xoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
XOO2430 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XOO2430 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XOO2430 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AAW75684
UniProt:
Q5H037
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All DBs
Position
2590257..2591765
Genome browser
AA seq
502 aa
AA seq
DB search
MILGGNGSAYAARCASGCRTCMPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEE
PISFFVQPADDLLPSPYATMVTAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSI
RFDDEFVRCGLFRNFYDPYEREWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFK
LEHLASANDVREGDAHEALSDVYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIA
MQPVLHISQRYPASRLCAAAVLPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYI
RAADLPEGERRIPLKEVHLNKSPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPEL
AEKVRQVYGSERAPAAATNDADASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPR
LIELLFRYRARNWPQTLSFDEQERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPD
DATKQALLDQLAAWGLDLQRTL
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
gtgatactaggcggcaacggcagcgcatacgccgcgcgctgcgcatctggatgtcgtacc
tgcatgcctgacagctttctcttctacgacctggaaaccttcggccaggacccgcgccgc
acccgcattgcacagttcgcagcggtgcggaccgacgcgcaactgcgcgtgatcgaagag
ccgatcagcttctttgtgcagccggccgacgatctgctgccctcgccctacgccaccatg
gtgaccgctatcacgccgcagcacgcgctgcgcgaaggcgtcaccgaggccgaggcgttc
gcgcgcatcgccgaacagatgagccggccgcagacctgtacgctgggctacaactcgatt
cgcttcgacgacgagttcgtgcgctgcggcctgtttcgcaatttttacgacccctacgag
cgcgagtggcgcggcggaaactcgcgttgggatctgctggatgtgttgcggatggtgcat
gcgctgcgtccggacggcatcgtctggccgcaacgcgaagatggcgccacctcgttcaag
ctggaacacctggccagtgccaacgatgtgcgcgaaggcgatgcgcacgaagcgctgtcg
gacgtgtacgccaccatcggcatggcgcgcaagtttcagcagcatcagccaaaactgtgg
gactacgcgctgcgtctgcgcgacaagcgctttgccgccaccttgctggacgtcatcgcc
atgcagccggtgctgcatatttcgcagcgctaccccgcctcgcgtctatgcgcggcggcg
gtgctgccgctgacacgccatccgcgcatcgacagccgcgtgatcgtgtttgatctggaa
ggcgacccggacgtgctgttgcggctaagccccgacgaaattgccgaccgcctgtatatt
cgcgccgcagatctgccggaaggcgagcggcgtattccactgaaagaagtgcatctgaac
aagtcgcccgcgctggtggcctggcagcatctacgcgctgcagattttgagcgcctgggc
gtggatcaggatgcagtattggccaaggcggcacgcatgcgcgaattgggccccgaactt
gccgaaaaggtacgccaggtttatggcagcgagcgcgcacctgcggcagcgaccaacgat
gctgacgcttcgctctacgatggctttctggccgaaggcgacaagcgtctgctggcgcaa
gtccgcaccagcgcaccggccgaactgtgcgcgttggagtcacgctttcgcgacccgcgc
ctgatcgaactactgttccgctaccgcgcgcgcaactggccgcagacactgtcgttcgac
gaacaggagcgctggaacgcgtatcgccgccagcgcctgctcgaagatcgcggcctgggc
gaagtgaccctggaacagtacaacgcgcagatcgtggatttacggcgtgctcaccccgac
gatgctaccaagcaagccctcctcgaccagctcgccgcctggggtttggacctccaacgc
acgctatga
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