Xanthomonas oryzae pv. oryzae KACC 10331: XOO2587
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Entry
XOO2587 CDS
T00235
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Pathway
xoo02020
Two-component system
xoo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
XOO2587 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XOO2587 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xoo03021
]
XOO2587 (rpoN)
Transcription machinery [BR:
xoo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XOO2587 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_IclR
HTH_23
HTH_31
HTH_Crp_2
Sigma70_r4
HTH_38
MarR
MarR_2
Phage_CII
DUF5429
Motif
Other DBs
NCBI-ProteinID:
AAW75841
UniProt:
Q5GZN0
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All DBs
Position
2738103..2739506
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AA seq
467 aa
AA seq
DB search
MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADNGDEAT
TNDDGASDIAAFDELPESTMWDVQSSSWNDGDDDRMQRVAAGESTDPHVRILRELALDLD
EAALGAAAFWLEQTDDAGYLTEALPMLQQLGATRLGMTVQAVEAIRQRLLHGDPAGLAAC
DLRECLQAQLRALPGRVPARHLAARILDGDLELLAAHDYAVLARAHDAEVDDTREAVRLI
LSLQPRPGDDLLQESNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALAEAGEA
AQPLRDMLQEARWLTRGLSMRYETLLRATRAIVERQAAFLARGEEAMAPLTLKEIADKIG
MHESTISRITTGKYIQTPRGTFELKHFFAVRLEGASVSGQAVKAMVRRLIESEPAGRPLA
DEAIAGLLSRQGVHIARRTVAKYREQLDIAPARERRRTTKPLLARAG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgaccatttccgcccagcttggccagcaactgcacctcaccccgcagttgttg
cagtcgatccgtctgttgcaattggacggcatgcagttggaactggaaatccgtcgtgcg
ctggaaaccaatccgttgctggagttggaagagctggccgataacggggacgaggccacc
accaacgacgatggcgccagcgatatcgccgcgttcgacgagcttccggaaagcacgatg
tgggacgtgcagagcagcagctggaacgatggcgacgacgatcgcatgcagcgcgtagcc
gccggcgagtccaccgacccgcacgtgcgcatcctgcgcgaattggcgctggatctggac
gaggcggcgttgggggccgccgcgttctggctggagcagaccgacgacgccgggtatctg
accgaagcgctgcccatgctgcagcagctgggcgccacccgtctgggtatgaccgtgcag
gccgtggaagcgatccgtcagcgtctgctgcacggtgacccggccggcctggccgcctgc
gatctgcgcgagtgtctgcaagcgcagctgcgtgccctgcccggccgtgtgccggcacgc
cacctggcggcgcgcatcctggacggcgatctggagctgctggcggcgcatgactacgcg
gtgctcgcgcgtgcgcacgatgccgaggtggacgatacgcgcgaagcggtgcggctgatc
ctgtcgctgcaaccgcgcccgggcgacgacctgctgcaggaaagcaacgccagcgtgatt
ccggatgtgctcgcctggcatgccgacggcagctggcgcgtcgcacttaatccggccacc
acccatcgcgtcagcatcaacccggtgcacgaacgcgcgctggccgaagccggcgaggca
gcacagccgttgcgcgacatgctgcaggaagcgcgctggctgactcgcgggctgtcgatg
cgctacgagaccctgctgcgtgcaacgcgcgccatcgtcgaacgccaggccgccttcctg
gcgcgtggcgaagaagcgatggcaccgctgacgctgaaagaaatcgccgacaagatcggc
atgcacgaatcgacgatctcgcgcatcaccaccggcaaatacatccagaccccgcgcggc
accttcgagctcaagcacttcttcgccgtgcggctggaaggcgccagcgtctccggccag
gccgtcaaggcgatggtgcgtcgcttgatcgaaagcgagccggccggtcggccgttggcc
gacgaggccattgccggattgctgtcgcggcaaggcgttcacattgcgcgccgcaccgtc
gccaagtaccgcgaacaactggatatcgccccggcacgcgagcgccgccgcaccaccaaa
ccgctgcttgcccgggcaggataa
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