Xanthomonas oryzae pv. oryzae KACC 10331: XOO2742
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Entry
XOO2742 CDS
T00235
Symbol
rnD
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xoo03016
]
XOO2742 (rnD)
Enzymes [BR:
xoo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
XOO2742 (rnD)
Transfer RNA biogenesis [BR:
xoo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XOO2742 (rnD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AAW75996
UniProt:
Q5GZ75
LinkDB
All DBs
Position
2906039..2907289
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AA seq
416 aa
AA seq
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MPAALSATIAHAAIRSPHSATTCSFQCSAARQAIATLGYSARSAQTLAVDGNHVPHWITH
PSELTDRLQAARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAALKEW
LTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQKLVQEVTGTL
LTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWLAEDAERLLAT
VEHDDGERWPHVSLRTAQFLEPAAQRRLLRLLRWRDLQARQSDRPRSWILDNEVASQLAR
FPPADLDALLQQFDKFPKAPRKLANAVWDALNTPLPDEEHAPLAQAATDGNKAVLKRLQD
TVAQRSHELGLPDGLLASRRHLETLIEQRSWPAALGQWRRAVLEAQVMPLLEASEA
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
ttgccagccgctctcagcgcgaccattgcccacgctgccatccggtcaccgcactcagcc
accacctgctccttccagtgctctgccgcacggcaggcgatcgcgacgttaggctattct
gcgcgttctgcgcaaacccttgctgtcgacggaaatcacgtgccccattggattacccac
ccctccgagctgaccgaccgcctgcaggcagcgcgcccagcgcgcatcggcttggatacc
gaattcattcgcgaacgcacctattggccgcaactggcgctggtgcagatggccatcggc
gaggagatcctgctgatcgatccgctgatccccggcatgaacgcggcgctcaaggagtgg
ttgaccgccaccgacatcgtcaaggtgatgcatagcgccagcgaagacctggtcaccttc
aaatgcgcgtgcggggtattgccgcggccgttgttcgacacccagatcgccgcggcgctg
gccggtgtcggcggtggcatgggctaccagaaactggtgcaggaagtgaccggcaccttg
ctcaccaagggcgaaacacgctcggactggatgcgtcgcccgctatcgccgtcgcagctg
gagtacgccgccgacgacgtgcggtacctgtttgcgatccacgacgaactcacccgtcgc
ctcaccgaacagaaccgcctgggctggctggccgaagatgccgagcgcctgctggccacg
gtggagcacgacgatggcgaacgctggccgcatgtgagcctgcgcaccgcgcaattcctg
gaaccggcggcgcaacgacggttgctgcgcctgctgcgttggcgcgatctgcaggcgcgt
caaagtgatcgcccgcgcagctggattctggacaacgaagtggcgagccagctggcgcgg
tttccacccgccgatctggacgccttgctgcagcagttcgataaatttcccaaagcgccg
cgcaagctcgccaatgcggtgtgggacgcgctcaacacgccattgcccgatgaagaacat
gcgccattggcgcaagccgctaccgacggcaacaaggccgtgctcaagcgcctacaggac
accgtggcgcagcgtagccacgaacttggcttgccggatggtctgctggcctcgcgccgg
cacctggaaaccttgatcgaacagcgcagctggcccgcagcgctgggccaatggcggcgc
gcggtgctggaagcgcaggtgatgccgctgctggaagcatccgaagcgtaa
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