Xanthomonas oryzae pv. oryzae KACC 10331: XOO3073
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Entry
XOO3073 CDS
T00235
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Pathway
xoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOO3073 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoo03019
]
XOO3073 (rne)
03009 Ribosome biogenesis [BR:
xoo03009
]
XOO3073 (rne)
Enzymes [BR:
xoo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XOO3073 (rne)
Messenger RNA biogenesis [BR:
xoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XOO3073 (rne)
Ribosome biogenesis [BR:
xoo03009
]
Prokaryotic type
rRNA processing factors
XOO3073 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAW76327
UniProt:
Q5GY94
LinkDB
All DBs
Position
3304652..3308365
Genome browser
AA seq
1237 aa
AA seq
DB search
MRNATMKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEA
AFVDYGAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAAL
TTFISLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRD
AEELQWDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPEL
YADAQEFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTE
ALTAVDVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQR
EVENKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVE
SLSLSIIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQ
LHTPHYEVTRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAPPAVTSIKPSQPA
PVREETPAPVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDA
GRNHRNERGERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQPASGQGAQNGAQ
AQQQAQTPKPPRNEAQSPKQQQPQQAQQQKPKPQNQTPRPPRTPAQQDGAQAERQPRPAR
QDEGMAAAQTVTSTAAMATTSSVVAAITDAAAPATAQTNANEAAQAHAVDVTVSASTADP
GADASVAAPAQDAAGDDAANGEGGSRRRRGRRGGRRRRRGVGANGGEGGASVDGLEGDDL
DGDADNDLDSDSEGDAAAAQAHASAAPRAGQPEFDFDDDAPAPTVRAKPEPTAQAAAKPR
PVPKERAEPQVGNDTSLTTAPVSNTVPASQPPVATPVAKADTNHERPAAPTVAADAPAKP
APAATASTAVNADVAATQAVKQRPAPVAQHAPAAPAPVAAPAPVASTPVPAGAAVAPVAE
TASTAPVATPSAPASTVASPVSNVAATSTQHQPLGSASARAAASDTDKAAAPNADRQQRA
AAADVATPATTQAAPVQTTPVKQTADLSAPVAAMPAAQAEVVTATSPHAEPPAAQAPSSE
VAVTATSTLVQASPTADATPVRKRYAPVQTTMLDTLSPNDAATSAPAASEHPCARCSTAR
SNGSGIGIGSGRQAQADGGGIRSQACCPIDGGRQGAG
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
gtgaggaacgcaacaatgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgc
gtggcgattgtggacggccagaccctgtacgacatcgacatcgaacagccgtccaaggaa
caaaagaagtccaacatctataagggccgtattacccggctcgagccgtctctggaagcg
gcgttcgtggactatggcgccgagcgccatggcttcttgccgctgaaggaaatttcccgc
gattatttccaggccggcgtcgaccacaacaagtcgaccattcgcgagctgctgcgcgaa
ggccaagaaatcgtggtgcaggtcgacaaggaagaacgcggcaacaagggcgctgccctg
accacgttcatctcgctggccggtcgctacatggtgctgatgcccaattcgccgagcgcc
ggtggcgtctcacgccgcatcgaaggcgaagaccgcgccgcactgaaggaagcgctggac
aagctggatattccggacgacatgggcgtgatcatccgcaccgccggtgtgggccgtgat
gccgaagagctgcagtgggatctggactatctgctgcagacctggaaggcaattgccgag
gctgcgctgagcaagccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgc
gccctgcgcgactacctgcgtgccgacgtcggcgagatcctggtcgatacaccggagctg
tacgccgacgcccaggaattcatgaagcaggtaatgccgcaaagcctgcgcaagctcaag
cactacaccgacgacatcccgctgttcaatcgcttccagatcgaatcgcagatcgaaggc
gcctacgagcgcaacgtgcgcctgccctcgggcggctcgatcgtggtcgatcagaccgaa
gcgctgactgcggtcgacgtcaactcctcgcgcgccaccaagggcagcgacatcgaagaa
accgcgttccagaccaacctggaagcggccgaagaagtcgcacgccagctgcgcctgcgc
gacctgggtggcctggtggtcatcgacttcatcgacatggcctcgtccaagcatcagcgc
gaagtcgaaaacaagctgcagaacgcgctcaagtacgaccgcgcccgcgtgcagctgggc
cgtatctcgcgcttcggcctgatggaaatgagccgccagcgcctgcgtccgagcctgggc
gaatccagccagatcgtctgcccgcgttgtgatggccatggccgcatgcgcagcgtcgag
tcgctgtcgctgtcgatcatccgcgtggccgaagaacacgcgatgaaggaaaacaccggc
caggtgctggtgcaggcgccagtggaaatcgccaactacctgctcaacgaaaagcgcagc
gcgctgcgcgagatcgaacaacgtcacgagtcgccgatcatcatcgtcgccgacgaacag
ttgcacaccccgcactacgaagtcacgcgcctgcgcgaaaacgagttgggcgaagacagc
ggcaagccgagctatcagcgcggcaccccgcgcaagctgccggtgcacgcgctgaccaag
gcgcaattgaatatcccggcacctccggcagtcacctcgatcaagccgagccagccggcg
ccggtgcgtgaagagaccccggccccggtggcgcccgtcgccgctccggcaccggtggtg
actgtgccgattccggccccggtcaccggcgtggtcggctggttgaagcgcatcttcggc
ggcgtcgagccgctcgctcctgctcccgagtcgattccgcgcccgcgtcagaacgatgcc
ggccgcaatcaccgtaacgaacgcggagagcgtggcggtcaacgtcgcgacggtcgcgat
gcgcgtaacggcggtcatagcggcaaccagcagcgtggcaatggcaatggcgccaacaag
gaacgccgtgacgagcgccgccagccagccagcggccaaggcgcgcagaacggtgcacag
gcacagcaacaggcgcagacgcccaagccgccgcgcaatgaagcgcagtcaccgaagcaa
cagcagccgcagcaggctcagcaacagaagcccaagccgcagaaccagaccccgcgtccg
ccgcgtacacctgcacagcaggacggcgcgcaggccgagcgtcagccgcgtccggcacgt
caggatgaaggcatggccgcagcacagaccgtcacctcgactgccgcaatggcaacgacg
tcgagcgtggtggctgccattaccgatgccgctgcacctgccactgcgcagaccaacgct
aacgaagcggcgcaggcgcatgcggttgacgtcacggtgagcgcgtccaccgctgatccc
ggtgcagacgcaagtgtggctgcaccggcccaggatgccgcgggcgacgatgcagccaat
ggcgaaggcggaagccgtcgtcgccgcggtcgtcgtggtggccgtcgtcgtcgtcgtggc
gttggtgccaacggcggcgaaggcggagcaagcgtcgatggtctggaaggcgacgatctg
gacggtgatgccgacaacgatctcgacagcgacagcgaaggcgacgccgccgctgctcag
gcgcatgcctcggccgcaccgcgcgccggccagccggagttcgatttcgacgacgacgca
ccggcacccaccgtccgtgccaagcccgaacccactgcgcaggcagctgccaaaccgcgc
ccggttcccaaggagcgcgcggagccgcaagtcggcaacgacacgtcgttgaccactgcg
ccggtttccaacaccgtgccggcatcgcagccgccagtagcaacacccgttgccaaggct
gacaccaaccacgagcgccccgctgcgccgaccgttgccgcagatgcgcctgccaagccc
gcgcccgctgccacagcgtcgacggccgtcaacgcagatgttgcggcaacgcaagcggtg
aaacagcgcccggctccggtcgcgcaacacgctccagctgccccggcaccggttgctgct
ccggcacccgtggcatctacgccggtaccggctggtgctgctgtagctcccgtcgccgag
accgcatcgacggcaccggtcgccactccgtcggctccggcatcaactgtcgcatcgcct
gtgtcaaacgttgctgcaacaagcacacagcaccagcctttgggttcggcgtctgcacgt
gctgctgcgtctgacacggacaaggctgcggcaccgaacgctgaccggcagcagcgcgct
gctgcggcggacgttgcaacgcctgcgacgacgcaagcggcaccggtacagaccacacct
gtaaagcagactgccgatctatcggcacctgtggcagcgatgccggctgcacaggccgag
gtggttacggccacgtctccacacgccgaaccgcctgctgcgcaggcgccatcgtccgag
gtggcagtgaccgctacatcgacgctcgtgcaggcaagcccgactgcagacgctacgcca
gtgcggaagcggtatgccccggtgcaaaccaccatgctcgatacattgagcccgaacgat
gctgcaacgtcagcacccgcggccagcgaacatccctgcgcccgctgcagcaccgcaaga
agcaatggcagtggcattggcattggcagtggcagacaagcccaagccgacggtggtggt
atccgaagtcaagcctgttgccccatcgacggaggccgacaaggcgcaggatga
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