Xanthomonas oryzae pv. oryzae KACC 10331: XOO3214
Help
Entry
XOO3214 CDS
T00235
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Pathway
xoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOO3214 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoo03019
]
XOO3214 (pnp)
03016 Transfer RNA biogenesis [BR:
xoo03016
]
XOO3214 (pnp)
Enzymes [BR:
xoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
XOO3214 (pnp)
Messenger RNA biogenesis [BR:
xoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XOO3214 (pnp)
Transfer RNA biogenesis [BR:
xoo03016
]
Prokaryotic type
tRNA degradation factors
XOO3214 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
KH_PNO1_2nd
DUF7680
Motif
Other DBs
NCBI-ProteinID:
AAW76468
UniProt:
Q5GXV3
LinkDB
All DBs
Position
complement(3451814..3453928)
Genome browser
AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTDLKDSQLELVVAG
TANAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELAVEAGTKPSDWVAPAKNDG
MIAALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGE
LEYQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVPASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcacccttgagacgggc
gaaatcgctcgccaggcaggcggtgccgtcatcgtcaagttcgacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaagggcaggacttctttcccctgacggtc
gattatcaggagaagttctacgccggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgtgcgaccgagaaggaaacgttgatctcgcgcctgatcgatcgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtgcagatcatcgccacggtgatgtcgatgaac
cctgacatcgacggcgatatcgccgcgctgatcggcgcatcggccgcgctgtcgctggcc
ggcactccgttcaacggcccgatcgctgcggcgaaggtcggttacaagaatggcgaatac
atcctcaacccgaccgtgaccgatctgaaggattcgcagctggagttggtcgtggccggt
accgccaatgcggtgctgatggtcgagtccgaagccgagttgctgtcggaagaagtgatg
ctgggcgcggtgacgttcggccatcgcgaaatgcagaaagtcatcaacatcatcaacgag
ctggccgtcgaagccggcaccaagccgtccgattgggtggctccggcgaagaacgacggc
atgatcgccgcgctgaaggaagcagtgggcgaccagctcgcttcggctttccaggtgcgc
gacaagctgcagcgccgcgatgcgatttcggcgatcaagaaggacgtgctgggtgcgctg
gcgccgcgcgccacgatcgaaggctgggctgccggtgatctggccaaggaattcggcgag
ctggaataccagaccatgcgtggctcggtgctcagcaccaaggtgcgtatcgacggccgt
gcactggataccgtgcgtccgatcagcgccaaggccggcgtgctgccgcggacccatggc
tcggcgctgttcacccgcggcgagacgcaggcgatcgtgatcaccacgctcggcaccgca
cgcgacggtcaggtcatcgacgcagtctcgggcgagtacaaggaaaacttcctgttccat
tacaacttccctccgtactcggtaggcgagtgcggtcgtttcggtgcaccgaagcgtcgc
gaaatcggtcacggccgtctggccaagcgcggcgtgcttgccgtgatgccgagcctggaa
gaattcccgtacaccatccgcgtggtttcggaaattaccgagtccaacggttcgtcctcg
atggcatcggtgtgcggtagctcgctggcgctgatggacgccggtgtgccgatcaaggcg
ccggttgccggtatcgcgatgggcctggtcaaggaaggcaacgacttcgtcgtgctttcc
gacatcctgggcgacgaagatcacctgggcgacatggacttcaaggtggccggtactgcc
gaaggcgtgtccgcgctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcattgcagcaggccaaggctggtcgtctgcacattctgggcgagatggcgcat
gcactgaccacaccgcgtcaggaactgagcgactacgcgccgcgcctgctgaccatcaag
attcacccggacaagatccgtgaagtgatcggcaagggcggctcgaccatccaggcgatc
accaaggaaaccggtacgcagatcgacatccaggacgacggcacgatcatcattgcctcg
gtcaacgcgattgccgcgcaggctgcgaagtcacgcatcgagcagatcacctcggacgtg
gagccgggccgcatctatgaaggcaaggtcgccaagatcatggacttcggcgcgttcgtc
accatcctgccgggcaaggacggtctggtgcacgtctcgcagatttccagcgagcgcgtg
gagaaggtcggcgacaagttgaaggaaggcgatctggtccgcgtcaaagtgctggaagtg
gacaagcagggccgcatccgtctgtcgatcaaggcagtggaagaaggcgaaggcgttccg
gcttcggccgagtaa
DBGET
integrated database retrieval system
