Xanthomonas oryzae pv. oryzae KACC 10331: XOO4296
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Entry
XOO4296 CDS
T00235
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma-32 factor
KO
K03089
RNA polymerase sigma-32 factor
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xoo03021
]
XOO4296 (rpoH)
Transcription machinery [BR:
xoo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XOO4296 (rpoH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Phage_terminase
IF2_N
KORA
HTH_11
HTH_10
UCR_14kD
HTH_3
Zf-Nsp1alpha
HTH_25
Motif
Other DBs
NCBI-ProteinID:
AAW77550
UniProt:
Q5GUS3
LinkDB
All DBs
Position
complement(4572954..4573943)
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AA seq
329 aa
AA seq
DB search
MLSCRTTVTQKARTFYKWNAGNSFCTRQSNSSTAKMVPMNQTTSTALVANNLPIPSALGS
LDAYIGAVHQIPVLSVDEEQNLARRFRDELDLDAARELVHSHLRFVVHVARGYNGYGLPL
GDLIQEGNIGLMKAVKRFDPDMGVRLVSFAVHWIRAEMHEFILKNWRIVKVATTKAQRKL
FFNLRKSKTRLGWLNASEVTAVAKDLNVSEREVMEMESRLSGRDIGFDASSDEDDDHGPP
SPVSYLVANEEDPSQAYERHDSEDNQLQLLREGMAGLDTRSRDIVKRRWLDSDSKVTLQE
LADEYGVSAERIRQIEANALKKMKALFVA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
gtgctgagctgtagaacaacggtgacgcaaaaagcccgaacgttctataaatggaatgct
gggaactctttctgtacccggcagtccaatagttcgactgctaagatggtgcctatgaac
cagactacttcgactgcccttgtggcaaacaatctcccgattcccagtgcgctcggttcg
ctggacgcctacatcggtgccgtgcaccagattccggtgctgtcggtcgatgaggagcag
aatctggcccgccgcttccgcgacgagctggatttggacgccgcgcgcgaactggtccat
tcccacctgcgcttcgtggtgcatgtggcccgcggctataacggctacggcctgccgctg
ggcgacctgatccaggaaggcaatatcggcctgatgaaggcggtcaagcgcttcgacccg
gacatgggcgtgcgtttggtcagcttcgcggtgcactggatccgtgccgaaatgcacgag
ttcatcctgaagaactggcgcatcgtcaaggtcgccacgaccaaggcgcagcgcaagctg
ttcttcaacctgcgcaagtccaagacccgtctgggctggctcaatgcgtcggaagtgact
gcggtcgccaaggacttgaacgtctcagagcgtgaagtgatggagatggagtcgcgtctg
tcgggtcgcgacatcggtttcgacgcctcgtccgacgaagacgacgatcacggcccgccg
tcgccggtgagctacctggtcgccaacgaagaagacccgtcgcaggcgtacgagcgccac
gacagcgaagacaaccagttgcagttgctgcgcgaaggcatggccggtctggatacgcgt
tcgcgcgacatcgtcaagcgtcgctggctggattcggattccaaggtgacgctgcaggag
ctggccgatgagtacggcgtgtcggccgagcgtatccgccagatcgaggcgaatgcgctg
aagaagatgaaggcgctgttcgtcgcctga
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