Xanthomonas oryzae pv. oryzae PXO99A: PXO_01517
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Entry
PXO_01517 CDS
T00763
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xop
Xanthomonas oryzae pv. oryzae PXO99A
Pathway
xop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXO_01517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xop03019
]
PXO_01517
03009 Ribosome biogenesis [BR:
xop03009
]
PXO_01517
Enzymes [BR:
xop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PXO_01517
Messenger RNA biogenesis [BR:
xop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PXO_01517
Ribosome biogenesis [BR:
xop03009
]
Prokaryotic type
rRNA processing factors
PXO_01517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACD59872
UniProt:
A0A0K0GME2
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All DBs
Position
3397682..3401398
Genome browser
AA seq
1238 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ
EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENK
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAPPAVTSIKPSQPAPVREE
TPAPVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHR
NERGERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQPASGQGAQNGAQAQQQA
QTPKPPRNEAQSPKQQQPQQAQQQKPKPQNQTPRPPRTPAQQDGAQAERQPRPARQDEGM
AAAQTVTSTAAMATTSSVVAAITDAAAPATAQTNANEAAQAHAVDVTVSASTADPGADAS
VAAPAQDAAGDDAANGEGGSRRRRGRRGGRRRRRGVGANGGEGGASVDGLEGDDLDGDAD
NDLDSDSEGDAAAAQAHASAAPRAGQPEFDFDDDAPAPTVRAKPEPTAQAAAKPRPVPKE
RAEPQVGNDTSSTTAPVSNTVPASQPPVATPVAKADTNHERPAAPTVAADAPAKPAPAAT
ASTAVNADVAATQAVKQRPAPVAQHAPAAPAPVAAPAPVASTPVPAGAAVAPVAETASTA
PVATPSAPASTVASPVSNVAATSTQHQPLGSASARAAASDTDKAAAPNADRQQRAAAADV
ATPATTQAAPVQTTPVKQTADLSAPVAAMPAAQAEVVTATSPHAEPPAAQAPSSEVAVTA
TSTLVQASPTADATPVRKRYAPVQTTMLDTLSPNDAATSAPAASEHPAPAAAAQEAVAVA
VADKPKPTVVVSEVKPVAPSTEADKAQDDDSNKPRGDH
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctataagggccgtattacccggctcgagccgtctctggaagcggcgttcgtggactat
ggcgccgagcgccatggcttcttgccgctgaaggaaatttcccgcgattatttccaggcc
ggcgtcgaccacaacaagtcgaccattcgcgagctgctgcgcgaaggccaagaaatcgtg
gtgcaggtcgacaaggaagaacgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggtcgctacatggtgctgatgcccaattcgccgagcgccggtggcgtctcacgc
cgcatcgaaggcgaagaccgcgccgcactgaaggaagcgctggacaagctggatattccg
gacgacatgggcgtgatcatccgcaccgccggtgtgggccgtgatgccgaagagctgcag
tgggatctggactatctgctgcagacctggaaggcaattgccgaggctgcgctgagcaag
ccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
ctgcgtgccgacgtcggcgagatcctggtcgatacaccggagctgtacgccgacgcccag
gaattcatgaagcaggtaatgccgcaaagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaatcgcttccagatcgaatcgcagatcgaaggcgcctacgagcgcaac
gtgcgcctgccctcgggcggctcgatcgtggtcgatcagaccgaagcgctgactgcggtc
gacgtcaactcctcgcgcgccaccaagggcagcgacatcgaagaaaccgcgttccagacc
aacctggaagcggccgaagaagtcgcacgccagctgcgcctgcgcgacctgggtggcctg
gtggtcatcgacttcatcgacatggcctcgtccaagcatcagcgcgaagtcgaaaacaag
ctgcagaacgcgctcaagtacgaccgcgcccgcgtgcagctgggccgtatctcgcgcttc
ggcctgatggaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatc
gtctgcccgcgttgtgatggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtggccgaagaacacgcgatgaaggaaaacaccggccaggtgctggtgcag
gcgccagtggaaatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgcgagatc
gaacaacgtcacgagtcgccgatcatcatcgtcgccgacgaacagttgcacaccccgcac
tacgaagtcacgcgcctgcgcgaaaacgagttgggcgaagacagcggcaagccgagctat
cagcgcggcaccccgcgcaagctgccggtgcacgcgctgaccaaggcgcaattgaatatc
ccggcacctccggcagtcacctcgatcaagccgagccagccggcgccggtgcgtgaagag
accccggccccggtggcgcccgtcgccgctccggcaccggtggtgactgtgccgattccg
gccccggtcaccggcgtggtcggctggttgaagcgcatcttcggcggcgtcgagccgctc
gctcctgctcccgagtcgattccgcgcccgcgtcagaacgatgccggccgcaatcaccgt
aacgaacgcggagagcgtggcggtcaacgtcgcgacggtcgcgatgcgcgtaacggcggt
catagcggcaaccagcagcgcggcaatggcaatggcgccaacaaggaacgccgtgacgag
cgccgccagccagccagcggccaaggcgcgcagaacggtgcacaggcacagcaacaggcg
cagacgcccaagccgccgcgcaatgaagcgcagtcaccgaagcaacagcagccgcagcag
gctcagcaacagaagcccaagccgcagaaccagaccccgcgtccgccgcgtacacctgca
cagcaggacggcgcgcaggccgagcgtcagccgcgtccggcacgtcaggatgaaggcatg
gccgcagcacagaccgtcacctcgactgccgcaatggcaacgacgtcgagcgtggtggct
gccattaccgatgccgctgcacctgccactgcgcagaccaacgctaacgaagcggcgcag
gcgcatgcggttgacgtcacggtgagcgcgtccaccgctgatcccggtgcagacgcaagt
gtggctgcaccggcccaggatgccgcgggcgacgatgcagccaatggcgaaggcggaagc
cgtcgtcgccgcggtcgtcgtggtggccgtcgtcgtcgtcgtggcgttggtgccaacggc
ggcgaaggcggagcaagcgtcgatggtctggaaggcgacgatctggacggtgatgccgac
aacgatctcgacagcgacagcgaaggcgacgccgccgctgctcaggcgcatgcctcggcc
gcaccgcgcgccggccagccggagttcgatttcgacgacgacgcaccggcacccaccgtc
cgtgccaagcccgaacccactgcgcaggcagctgccaaaccgcgcccggttcccaaggag
cgcgcggagccgcaagtcggcaacgacacgtcgtcgaccactgcgccggtttccaacacc
gtgccggcatcgcagccgccagtagcaacacccgttgccaaggctgacaccaaccacgag
cgccccgctgcgccgaccgttgccgcagatgcgcctgccaagcccgcgcccgctgccaca
gcgtcgacggccgtcaacgcagatgttgcggcaacgcaagcggtgaaacagcgcccggct
ccggtcgcgcaacacgctccagctgccccggcaccggttgctgctccggcacccgtggca
tctacgccggtaccggctggtgctgctgtagctcccgtcgccgagaccgcatcgacggca
ccggtcgccactccgtcggctccggcatcaactgtcgcatcgcctgtgtcaaacgttgct
gcaacaagcacacagcaccagcctttgggttcggcgtctgcacgtgctgctgcgtctgac
acggacaaggctgcggcaccgaacgctgaccggcagcagcgcgctgctgcggcggacgtt
gcaacgcctgcgacgacgcaagcggcaccggtacagaccacacctgtaaagcagactgcc
gatctatcggcacctgtggcagcgatgccggctgcacaggccgaggtggttacggccacg
tctccacacgccgaaccgcctgctgcgcaggcgccatcgtccgaggtggcagtgaccgct
acatcgacgctcgtgcaggcaagcccgactgcagacgctacgccagtgcggaagcggtat
gccccggtgcaaaccaccatgctcgatacattgagcccgaacgatgctgcaacgtcagca
cccgcggccagcgaacatcctgcgcccgctgcagcagcgcaggaggcagtggcagtggca
gtggcagacaagcccaagccgacggtggttgtatccgaagtcaagcctgttgccccatcg
acggaggccgacaaggcgcaggatgatgacagcaacaagccgcgtggcgatcactga
DBGET
integrated database retrieval system
