Xanthomonas oryzae pv. oryzicola BLS256: XOC_0103
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Entry
XOC_0103 CDS
T01873
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Pathway
xor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XOC_0103 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xor03400
]
XOC_0103 (recD)
Enzymes [BR:
xor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XOC_0103 (recD)
DNA repair and recombination proteins [BR:
xor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XOC_0103 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
Viral_helicase1
AAA_11
UvrD-helicase
SH3_13
Helicase_RecD
AAA_22
UvrD_C
DEAD
AAA_16
T2SSE
nSTAND3
SLFN-g3_helicase
AAA_28
AAA_29
DUF6002
Motif
Other DBs
NCBI-ProteinID:
AEQ94361
UniProt:
G7TIR8
LinkDB
All DBs
Position
complement(100253..102514)
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AA seq
753 aa
AA seq
DB search
MNHPNLLTALNQSGALRTLDLAFAQSLQRLEPETDPQVLAGAALASLAVTSGHAGLDPAR
AAMLLDARDGPSPPFPDPADWQRCLAASRWVDQPQPEDPAAADRPLVLERGLLYLRRYRE
YERRLALGLQRIAAQTSPPFAAATLAPLFAQLFPQATPLPRGEGARRAGEGKGLPEPSLQ
QEGTNPPVLSSNGTNQTAPSPTPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLR
IAQAHASNTPAPRIALAAPTGRAAERMAESLRAAVARAIADGIDPSLADALPTGASTLHR
LLGVIPDSPHFRHNADNPLPLDLIVVDEASMVDLPLMCKLVEAVADDTQLILLGDADQLP
SVEAGDVLAAILQAAGPGDALQPDDAQALQPLLGGAPVGSPRAVTSHIHTGGLAGHRVHL
LRGYRQADDFALAPLADAIRAGDADTALALLRSGELAGVHFHEDGEDPLALGRDALLAHW
RALATARDPAAALRDASRLRLLTAVRAGPQGARGLNARIEQLLAETGSGARRLGGASPWF
QGRLLLITENSYRHGLFNGDVGICLRSDPRALPGRSDAGPSPGQGDASAVTARGHAAPSS
RPGHAGDSAHHDAPATDSRAQGPLVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQG
SEFDEVWLQLPTRDARVLSRELLYTGITRARRALHLAGSEAVIRAALARHAARISGLAWR
LGAKDDKPQPVPLPTPAPLPQPPPSAPVQGALF
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacccgaatctcctcactgcgctcaaccagagtggcgccctgcgcaccctggat
ctggccttcgcgcaaagcctgcaacgcctggaaccggagaccgacccacaggtgctggcc
ggtgccgcgctcgcctcgctggctgtcaccagcggccacgccgggctggaccccgcccgc
gctgccatgttgctggacgcgcgcgatggcccatcgcccccattcccggaccccgccgac
tggcaacgctgcctggccgcctcgcgctgggtcgaccaaccacagcccgaagacccggct
gccgccgaccgcccgctcgtcctcgaacgcggtctgctttacctgcgccgttaccgcgag
tacgaacgccgcctggccctgggcctgcagcgcatcgccgcccaaacctcgccccccttc
gccgccgccaccctggcgccgctgttcgcacagttgttcccgcaagccacccctctcccc
cggggcgagggtgcccgcagggcgggtgagggtaagggcctgcctgagccatccctccag
caagagggcacaaatccgcccgtgctatccagcaacggcacgaaccaaacagcaccatcc
cccaccccagatcgccaagcgcaggccgcagccctcgcgctgcgccgcgcgctactgctg
gtcaccggcggccccggcaccggcaaaaccaccaccatcgcccgcctgctgttgctacgc
atcgcccaggcacacgcatccaacaccccggccccacgcatcgccctggccgcacccacc
ggccgcgccgccgagcgcatggccgaaagcctgcgcgccgccgtcgcgcgcgccatcgcc
gacggtatcgaccccagcctggccgacgccctgcccaccggcgccagcacgctgcaccgt
ctgctcggcgtcattccggattccccgcacttccgccacaacgccgacaacccgctgcca
ttggatctgatcgtcgtcgacgaagcctccatggtcgacctgccgctgatgtgcaaactg
gtcgaagccgtcgccgatgacacccagctgatcctgcttggcgacgccgaccagctgccc
tcggtggaagccggcgacgtgctcgccgccatcctgcaggccgccggccccggcgacgcg
ttgcagcccgacgacgcccaggcgttgcaaccgctgctcggcggcgcgcctgtgggcagt
ccacgcgcggtcacctctcacatccacaccggcggcctggccggtcaccgcgtgcacctg
ctgcgtggctatcgccaggcggacgacttcgcactcgccccactggccgacgccatccgc
gccggcgatgccgacaccgccctggccctgctgcgtagcggcgaactggccggcgtgcac
ttccacgaagacggcgaagacccgctggcactcggccgcgacgcgctgctcgcccactgg
cgcgcgctggccactgcccgagatcccgctgccgcattgcgcgatgcaagccgcctacgc
ctgctcaccgcggtgcgtgccggcccgcaaggcgcacgtggcctcaacgcccgcatcgaa
caactgctggccgaaaccggctccggcgcccgtcgccttggcggtgcctcgccctggttc
cagggccgcctgctgctgatcaccgaaaacagctaccgccacggcctgttcaacggcgac
gtcggcatctgtctgcgcagcgacccgcgcgccttgcctggccgcagcgacgcgggccct
tcccccggccagggcgacgcaagtgccgtgaccgcgcgcggccacgcggcaccgtcgtca
aggccgggccacgctggcgacagcgcacaccatgacgcccccgccaccgacagccgtgcc
caaggccccttggtcgcctggttcgaaggcgacggcgacggccaggtgcgcggcttccac
cccgccgcactgcccgcgcacgaaagcgccttcgccatgaccgtgcacaaggcccaaggc
agcgaattcgacgaggtctggctgcaactgccgacccgcgacgcccgcgtactcagccgc
gaactgctctacaccggcatcacccgcgcccgccgcgccctgcacctggccggcagcgaa
gcggtcatccgcgccgcactggcgcgccacgccgcgcggatctcggggttggcgtggcgg
ttgggtgcaaaagacgacaagccacagcccgttccactacccacgccagcgccgcttcca
caaccgccgccgagtgcgcctgtgcaaggtgcgctgttctga
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