Xanthomonas oryzae pv. oryzicola BLS256: XOC_0105
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Entry
XOC_0105 CDS
T01873
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Pathway
xor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XOC_0105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xor03400
]
XOC_0105
Enzymes [BR:
xor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XOC_0105
DNA repair and recombination proteins [BR:
xor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XOC_0105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEQ94363
UniProt:
G7TIS0
LinkDB
All DBs
Position
complement(102702..106775)
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AA seq
1357 aa
AA seq
DB search
MSISHVTDPYLQLPLHGVRLIEASAGTGKTFTLATLFTRLVVERGVRIGQILAVTFTEAA
TQELRRRIRERLVLAASLVPDAPVGAALAASESPAIQLPGATSASVAAAQTPTDLADDPS
RPGPLLHEAPDALLTRAILVTHLTGGSETPAALRRRLQQAVEEIDLAAVFTIHGFCARVL
REHALESGQAFAAPELLANDRQLLGEVAADLWRQRAADAAMAEDLIALWSGGPEALASDL
RALVRHPTLLPAVATTTDDAAALLQAVHAASDALAAAFQAHGTAFFDAIMSAIDGSILSK
VSYKPEWLASLWHWFESFAAAPSLNTVPHAKLRKLTAAELAAGTNQKFVDRTPASPMSHE
IDGYLTALARVQAWRSRRRIALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGA
QADALVARLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLAHAAGLEPALFLIGDPKQA
IYGFRGGDVRTYLAAAVTAEPAPPLSHNFRSRPGVLAAIDALYAQAGYSDAFLTDGIAFH
PVQAGTKRVDADLQRDGATAPGLTLWRAPEPPPPSDAAAAKTKQAGKPKPWSAGRARELA
TAACVAAIRGWLAGGRDGTATINARPVQAGDIAVLVRSHGEATRIQQALGAVGIPAVAAG
KQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAALERDGERHRRWQQ
QALDWRERWQRGGPLALIGDLGATHGQRLLALVDGERRLTNYLQLAELLQEADARALGPH
GLVDWLLRRIANADDNDDAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRSDKG
AGRHCVVHAPDSGRQLHWKMDRDDPTWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWIA
SGPFHQHERTALAGMLRALDALQGAAGEGAVVVDTSTPPAHLPRLPPPREAQVPPARNPQ
RHIAPEWWVYSFTQLANADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVGTDAEPFDP
RFAGNRFGVVMHDAFERCDFAAWQAWRPGQPAPDGQAAPILEALQRGGYAQDELDDGLAM
LTALIGHTLTVALPEGRLADVPESQRRNEMEFHFAMRPTRVQALLALLHRFGVVGDRQAF
GARQRLEGLMTGLIDLTYTVDGRWYVLDYKSNRLPSYDADALARAMAHSEYALQALIYTV
ALHRWLRFRLGEAYDYARDFGGVRYLFCRGLDAGRHAVVAAAASESVVETVGNSIAGQRL
PDSTRDSTLDRPAPAPNSGATTAGLARAPLGDPAPGIHAWRFEPALVQALDALFAGKPSD
ALSNDTLEQGSANGPKPLSPRESGWGEGTSAPGTPTP
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcagccacgtcaccgacccgtacctgcagttgccgctgcacggcgtgcgcctg
atcgaagccagcgccggcaccggcaagacctttacgctggccaccttgtttacccggctg
gtggtcgagcgcggcgtgcgcatcggccagattctcgcagtgaccttcaccgaagcggcc
acgcaggaactgcgccgtcgtatccgcgaacgcctggtgctggctgcaagcttggtgccg
gatgcgcctgtaggagcggccctggccgcgagcgaatcacccgcaatccagctgcctggc
gcaacatcggcttctgtagcagcggcccagaccccgaccgacctcgccgacgatccatcg
cggccagggccgctcctccacgaagcgcccgacgcattactcacccgcgccatcctggtc
acgcatctgaccggcggcagcgaaacacccgccgccttgcgccgccgtttgcagcaggcg
gtggaagagatcgatctggccgcggtgttcaccatccacggcttctgcgcgcgcgtgctg
cgcgaacacgcgctggaaagcggccaggcgttcgccgcgccggaactgctcgccaacgac
cgccaattgctcggcgaagtcgcggccgatctgtggcgacaacgcgccgccgacgcggca
atggccgaagacctcatcgcgctgtggtcgggcggccccgaggccttggccagcgatctg
cgcgccctggtgcggcatccaacgctgttgccggcggtcgccacaaccaccgacgatgcg
gccgccttgctgcaggccgtgcacgcggccagcgacgcattggccgccgcattccaggcg
cacggcaccgcatttttcgacgccatcatgtcggccatcgacggcagcatcctgagcaag
gtcagctacaaacccgagtggttggcatcgttgtggcactggttcgaaagcttcgccgct
gcgccatcgctcaacacggtgccgcatgcgaagttgcgcaagttgaccgctgcggaactg
gccgccggcaccaaccagaaatttgttgatcgcacgccggcttcgccgatgagccatgag
atcgatggctatctcactgcgctggcgcgtgtccaagcatggcgcagccgtcgccgcatc
gccctgctgcacgcactgcgcgacgacgccatcgcacggctcgcgctgctcaagcggcaa
cgccgcgtgcagacctacgacgatctggtcgatggtgtcgcgcacgcattgcaaggcgca
caggccgatgcgttggtcgcacgtctgcgcacgcaatacgccatcgcactggtggacgaa
ttccaggacaccgacgaccgccaatggtcgatcttttccaacgtgttcggcgaaggcccg
ctggcacacgccgccgggctggaaccggcgctgtttctgatcggcgaccccaagcaggcc
atctacggtttccgtggcggcgatgtgcgcacctatctggccgccgcagtcactgccgaa
ccggcgccaccgctgagccacaacttccgctcgcgccccggcgtgctggcggccatcgac
gcgctgtacgcgcaggccggctacagcgatgccttcctcaccgacggcatcgccttccat
ccggtgcaggccggcaccaaacgcgtggatgccgacctgcaacgcgacggtgccactgct
cctgggttgacgctgtggcgcgcgccggagccgccaccgccatctgacgcggcagcggcg
aaaaccaagcaagcaggcaagcccaagccctggagcgccggccgcgcacgtgagctggcc
accgccgcctgcgtcgcggcgatccgcggctggttggccggtggccgcgacggcactgcc
accatcaacgcgcgcccggtgcaggccggcgatatcgccgtgctggtgcgcagccacggc
gaggccacgcgtatccagcaagcgctcggcgcggtgggcattccggccgtcgcggccggc
aaacaaagcttgttcgccaccgacgaagccttggaattgctcgcactgctgcaggccttg
ctcgacccgggcgatgacagccgcctgcgcgccgccttggccacggtgttgatcggcgaa
gacgccatcgccatcgccgcacttgaacgcgacggcgagcgacaccgccgctggcagcag
caggcgctggactggcgcgaacgctggcagcgtggcggcccgctcgccttgatcggcgac
ctcggtgccacgcacgggcaacgcctgcttgccttggtcgatggcgagcgccgcctcacc
aactatctgcagctggccgaactgctgcaggaagccgacgcccgcgcgctcggcccgcat
ggcctggtcgactggctgttgcggcgcatcgccaatgccgacgacaacgatgacgcccag
caattgcggctggaatcggacgcgcgccgcgtgcagatcgtcactctgcacaaaagcaag
ggcctggaatatccgctggtgtttttgccgtatatcggcatcggccgcagcgacaaaggt
gccggccgccattgcgtggtgcatgcgccggacagtggccgtcagctgcattggaaaatg
gatcgggacgacccgacctggagcgccgccgaagccgcctggaagcaggaacaacgtgcc
gaagacgcgcggctgctctatgtcggcctgacccgtgccgagcacgcgttgtggatcgcc
agcggcccgttccatcagcacgaacgcaccgcactggccggcatgttgcgcgcgctcgac
gctttgcagggcgccgcaggcgagggcgcggtggtggtcgacacgtccacgccgcccgcc
cacctgccgcggctgccgccaccgcgcgaggcgcaggtgccgcccgcccgcaatccgcag
cggcatatcgccccggaatggtgggtctacagcttcacccagctggccaatgccgatgcc
ggtgccgccaccgacccgatggccagcgccaccgtcgtcggtagcggcggcagcgacgaa
ccgtccggcagcgaagcggtcgccgtggccgtgggcaccgacgccgaaccgttcgatcca
cgctttgccggcaaccgcttcggcgtggtgatgcacgacgcgttcgaacgctgcgacttc
gccgcctggcaggcctggcgaccgggccaacccgcacccgacggccaggccgcgcccatc
ctcgaggcgctgcaacgcggcggctacgcccaggacgaactcgacgacggcctggccatg
ctgaccgcactgatcggccacaccctcaccgtggccttgcccgaaggccgcctggccgac
gtgcccgaatcgcagcgccgcaacgaaatggaattccatttcgccatgcggcccacccgc
gtccaggcgctgctcgcactgctgcatcgcttcggcgtggtcggcgaccgccaggccttc
ggcgcgcgtcagcggctggaaggcctgatgaccggcctgatcgacctcacctacaccgtg
gacgggcgctggtatgtgctcgactacaaatccaaccgcctgcccagctacgacgccgat
gccctggcccgcgccatggcgcatagcgagtacgcgttgcaggcgctgatctacaccgtg
gccctgcaccgctggttgcggttccgcctgggcgaggcctacgactacgcccgcgacttc
ggcggcgtgcgctatctgttctgtcgcggcctggatgccggacgtcatgcggtggtggct
gctgccgcatccgaatccgttgtcgaaaccgtcggcaattccatcgcaggccagcgcctg
cccgactccacccgcgactccacactggacagacccgcccccgccccgaactccggcgcc
acgaccgctggcctcgcgcgcgcacccttgggcgatccggcgcccggcatccacgcctgg
cgtttcgaaccagcgctggtgcaagccctggacgccttgttcgccggcaagccgtcagat
gcgctgtccaatgacacgctagagcaaggctcggccaacggccctaagcccctctccccc
cgggagagcggttggggtgagggtacgtccgcaccagggacgcccactccatga
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