Xanthomonas oryzae pv. oryzicola BLS256: XOC_0137
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Entry
XOC_0137 CDS
T01873
Name
(GenBank) type I topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xor03032
]
XOC_0137
03400 DNA repair and recombination proteins [BR:
xor03400
]
XOC_0137
Enzymes [BR:
xor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XOC_0137
DNA replication proteins [BR:
xor03032
]
Prokaryotic type
DNA Topoisomerases
XOC_0137
DNA repair and recombination proteins [BR:
xor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XOC_0137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF7508
Motif
Other DBs
NCBI-ProteinID:
AEQ94391
UniProt:
G7TIU8
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All DBs
Position
139039..140208
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AA seq
389 aa
AA seq
DB search
MKAKRVLRNAAVTASTAGKLAAVATGAAVAPAAVAQAKATARAAGLTYVNDQQPGISRRK
AGKSFSYRDADGQRIGDADTLHRIRSLAIPPAYTEVWICAKPNGHLQATGRDARRRKQYR
YHADWAQVRGEGKFERVIAFGTALPKLRRRLRRDLVLPGFPREKVLAIVVALLADTLVRV
GNAEYARSNRSYGLTTLRNRHMEFLKGGRARLRFRGKSGQDHDIEVDDKQLVTLIRQCQQ
LPGQSLFQYHDDDGQLQPVDSGEVNDYLREAMGEDFTAKDFRTWGGTLAALQRLARLPLP
ERSSERALTQVQNDVIREVADALGNTPSVCRKAYIDPCVFEGWRAGQLQAMAAGVRGERQ
WEAATLKFLTASRSKLKAQATPASKRRSA
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccaaacgtgttcttcgcaatgccgcagtcaccgccagtaccgccggaaagctt
gctgcggtggccactggtgccgctgtggccccggccgccgtggcgcaggccaaggctacc
gcacgcgcggccgggctgacgtacgtcaacgaccagcagcccggtatcagccgccgcaaa
gccggcaagagcttcagttaccgcgatgccgacggacaacgcatcggcgatgccgacacc
ttgcaccgcatccgttcgctggccattccgccggcgtataccgaggtgtggatctgcgcc
aagcccaatgggcatctgcaggccaccggacgcgacgcacggcggcgcaagcagtaccgg
tatcacgccgattgggcgcaggtgcgtggcgaaggcaagttcgaacgcgtgatcgccttc
ggtacagcgctgcccaagctgcggcggcggttgcgtcgcgacctggtgctgccaggattt
ccgcgcgagaaggtgttggcgatcgtggtggcattgctggccgacaccctggtgcgtgtg
ggcaatgccgaatatgcgcgcagcaatcgttcgtacgggctgaccacgctgcgcaaccgg
catatggaatttctgaagggcggccgcgcgcgactcagattccgcggcaaaagcggccag
gaccacgacatcgaagtggacgacaagcaactggtcacactgattcgccaatgccagcaa
ttgccggggcaatcgttgttccagtaccacgacgacgatggccagttgcagccggtggat
tcgggcgaggtcaacgactatctgcgcgaggcgatgggcgaagacttcaccgccaaggat
ttccgcacctggggcggcaccttggccgcattgcagcggctggcgcgcttaccgttaccc
gaacgcagcagcgaacgcgcgctgacccaggtgcaaaacgatgtcatccgcgaagtggcc
gacgccttgggcaacacgccctcggtatgccgcaaggcctacatcgacccgtgcgtgttc
gaaggttggcgtgcgggccagctccaagcgatggccgccggtgtgcgcggcgagcgccaa
tgggaagcagccacgctgaagttcctgaccgcctcgcgcagcaagctcaaggcacaggca
acgccggcgtcgaagcggaggtccgcatag
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