Xanthomonas oryzae pv. oryzicola BLS256: XOC_0485
Help
Entry
XOC_0485 CDS
T01873
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Pathway
xor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOC_0485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xor03019
]
XOC_0485
Enzymes [BR:
xor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XOC_0485
Messenger RNA biogenesis [BR:
xor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XOC_0485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_C_2
Cas3-like_C_2
DUF594
CMS1
P-loop_SecA
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEQ94705
UniProt:
G7T9P6
LinkDB
All DBs
Position
complement(484183..485562)
Genome browser
AA seq
459 aa
AA seq
DB search
MAAPWIGLRCKRTCTSLRHARRRQCADNRAMSRKADSLSLQLPPLFESALARAGVRTLTP
IQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQQRLQVPEQAPRVLGGLILVPTRELV
AQVAQTLLSLAAALPRGLKIVAATGGEAINPQLMALRGGADIVIATPGRLLDLVTHNALR
LSQVRTLVLDEADRLLDLGFGAELDRILALLPAQRQSVLVSATFPPAIASLAKRRLRDPL
RITIDATPEHAPAIAQHAIAVDAGQRTQLLRHLLQEHAWPQLLVFVASRHTADKVAEKLS
KTGIEALPLHGELSQGRRERTLRAFKQADVQVLVATDLAARGIDIDALPAVLNYDLPRST
VDYTHRIGRTARAGASGEAISFVTAERAQQWRLIEKRQGLRVPTSVIEGFEPSPAEASAR
DAPDAAVRAADDNGGIKGKRPSKKDKLRAAAQAQTGKPG
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttggcggcaccatggatcggtctgcgctgcaagcgcacctgcacgtcgttgcggcatgca
cgccgtcgacaatgtgcggataatcgcgcgatgtcacggaaagcagattcgctgtcgtta
cagctaccgcccttgttcgagtccgcgctcgccagggccggtgtgcgtacgctcacgccg
atccaggtcgcgatgattccgccgatgctggccgcacgcgacctgatcgccaccgcgcag
accggctcgggcaagaccctggcgtatgccttgccgctgctgcagcagcgcctgcaggtg
ccggaacaggcgccgcgcgtgctgggcgggctgatcctggtgccgacgcgtgagctggtc
gcgcaggtcgcgcagaccctgctgtcgctggcagcggccttgccgcgagggttgaagatc
gtcgccgccaccggcggtgaagccatcaatccgcaactgatggccttgcgcggcggcgcc
gatatcgtcatcgccaccccggggcggctgctggacttggtgacgcacaatgcgctgcgc
ctctcgcaggtacgcacgctggtgctggacgaagccgatcgcctgctcgacctgggcttt
ggcgccgagcttgatcgcatcctggccctgctgccggcgcagcggcaaagcgtgctggtc
tcggccaccttcccacccgccatcgcgtcgctggccaagcgtcgcctgcgcgatccgttg
cgcatcaccatcgacgccacgcccgagcacgcaccggcgatcgcgcaacacgccatcgca
gtggatgccggtcagcgcacgcagctgctgcgtcatctgctgcaggaacacgcctggccg
cagctgttggtgttcgtcgccagccgccataccgccgacaaggttgccgaaaaactgagc
aagaccggcatcgaggcgttaccgctgcatggcgaactgagccagggccgccgcgaacgc
acgctgcgcgccttcaaacaggcggacgtgcaggtgctggtggccaccgatctggccgcg
cgcggcatcgacatcgacgccttgccggcggtgctcaactacgatctgccccgctccacc
gtcgactacacccaccgcatcggccgcaccgcgcgcgccggtgccagcggcgaggcgatc
agcttcgtcactgccgagcgcgcgcagcagtggcggctgattgaaaaacgccagggcctg
cgtgtgccgaccagcgtgatcgaaggcttcgagccgtcgccggccgaggcatctgcccgc
gatgcgcccgacgcagcggtgcgggcagccgatgacaacggaggcatcaagggcaagcgg
ccgagcaagaaggataaattgcgtgcggcggcgcaggcgcagactggcaagcccggctga
DBGET
integrated database retrieval system
