Xanthomonas oryzae pv. oryzicola BLS256: XOC_0597
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Entry
XOC_0597 CDS
T01873
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Pathway
xor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOC_0597 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xor03021
]
XOC_0597 (rho)
03019 Messenger RNA biogenesis [BR:
xor03019
]
XOC_0597 (rho)
Transcription machinery [BR:
xor03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
XOC_0597 (rho)
Messenger RNA biogenesis [BR:
xor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XOC_0597 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
OB_RNB
S1CSD-TOTE-2
Fungal_virus_P2_C
Spore_III_AA
AAA_22
TFIIA
Motif
Other DBs
NCBI-ProteinID:
AEQ94806
UniProt:
G7TAN9
LinkDB
All DBs
Position
complement(596365..598254)
Genome browser
AA seq
629 aa
AA seq
DB search
MSDHPSSDTGSSVDAPVEKRVRKPRVSKTAVTDEDGGAQQPNLPLPASPAPEAPRAPQAP
SRAADPAPAQTSSDGAHAGPAPSANHGGDTHGESREGGQSQQQRFNQAQQQQNQNQAQSQ
GQGQQQAQAQAQGQNQNAGQNQQGQGGQGQGQNQQGQNQQGNRRDRFRNRRDRGPRDRFG
NEGGGMPSSDGSNEPFIARPHPAVPEGFPVYSLSDLKRMPAQKLLDIADQLNIQEGVARA
RKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRF
NLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKGKVLFENLTPLFPRRRFRLER
GDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLI
DERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITR
LARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDE
VIYEEFKGTGNSEVHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHP
MDEIAAMEFLLDKMKTTKSNDEFFSSMKR
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgatcatccttcctccgataccgggagcagcgtcgacgctcccgtcgagaagcgc
gtgcgcaagccgcgcgtgagcaagaccgccgtcaccgatgaagacggtggcgcacagcag
cccaacctgcccttgcccgccagccccgcacccgaagcaccccgtgccccgcaggcaccg
tcgcgcgctgccgacccggcaccggcgcagacgtccagcgatggcgcacacgccggtccg
gcgcccagcgccaaccacggtggcgacacccacggcgagtcccgcgagggcggccagtcg
cagcagcagcgcttcaaccaggcgcaacaacagcagaaccagaatcaggctcaaagccag
gggcaaggccagcagcaggctcaagcccaggcacaaggccagaaccagaacgccggccag
aaccagcaaggtcagggcggacagggtcaaggtcagaatcagcaaggccagaaccagcag
ggcaatcgacgcgaccggttccgcaaccgccgcgaccgcggcccgcgtgatcgtttcggt
aacgaaggcggcggcatgccttcgtccgatggcagcaacgagccattcatcgcgcgtccg
catccggccgtgccggaaggcttcccggtctattcgctgagcgatctcaagcggatgccg
gcgcagaagctgctggatatcgccgatcagctcaatatccaggaaggcgtggcgcgtgcg
cgcaagcaggacgtgatcttcgccctgctcaaggtgctcacccgtcatggcgaaggcgtt
gccgccgatggcgtgctggaaatcctgccggacggcttcggtttcctgcgtgctgcagaa
gccagctacctggccggcccggacgatacctatatttcgcccagccagatccgccgcttc
aatctgcgcaccggcgaccatctgtccggccgcatccgcttcccgaaggacggcgaacgc
tatttcgcgctgtcgatcgtcgacaccatcaacggtgagccgctggaagcgagcaagggc
aaggtgctgttcgagaacctgaccccgctgttcccgcgtcgccgcttccgtctggagcgt
ggcgatggctccaccgaggacatcaccggccgcatcctggatctgatggcgccgcagggt
aagggtcagcgtgcgctgatcgtctctccgcccaaggccggtaagacgatgatgatgcag
caggtggccacggccatcaccaccaatcaccccgaagtgcacatgatcgtgctgctcatc
gacgagcgcccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaagtcatctcc
tccacgttcgacgagccggctgcgcgccatgtgcaggtcgccgagatggtgatcgagcgg
gccaagcgcctggtcgagcacaagaaggacgtggtgatcctgctggactccatcacccgt
ctggcgcgcgcctacaacaacgtggtgcccagctccggcaaggtgctcaccggtggtgtg
gacgccaatgccctgcaccgcccgaagcgcttcttcggtgcggcgcgtaacgtggaagaa
ggcggctcgctgaccatcatcgcgacggcgctggtggaaaccggcagcaagatggacgag
gtgatctacgaagagttcaagggcaccggcaacagcgaagtgcatctgaaccgtcgcatc
accgaaaagcgtgtgtacccggcaatcgacatcaaccgttcgggcacgcgccgcgaagac
ctgctgatcgagccggagctgctgcagaagatctggatcctgcgcaagctgctgcacccg
atggacgaaatcgccgcgatggaattcctgctggacaagatgaagaccaccaagtccaac
gacgagttcttcagttcgatgaagcgctga
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integrated database retrieval system
