Xanthomonas oryzae pv. oryzicola BLS256: XOC_1022
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Entry
XOC_1022 CDS
T01873
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Pathway
xor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XOC_1022 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xor03021
]
XOC_1022 (rpoC)
03400 DNA repair and recombination proteins [BR:
xor03400
]
XOC_1022 (rpoC)
Enzymes [BR:
xor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XOC_1022 (rpoC)
Transcription machinery [BR:
xor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XOC_1022 (rpoC)
DNA repair and recombination proteins [BR:
xor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XOC_1022 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AEQ95223
UniProt:
G7TF55
LinkDB
All DBs
Position
1011674..1015891
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
MVELHAKVKVRITQVDVDAVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK
NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSM
NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLKERV
LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARC
YGRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSV
KFNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYGTTITAKDGDAVKAGQSVA
NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAHAKELRPIV
RIVDGKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF
EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ
MLRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSE
METLSGKPAVAEPVAAVADAGADEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgattcgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggtcacatcgatctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggtttgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtcaccgagccgggtctgactccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgatttcgacgccgctatg
ggtgccgaggccgtgtacgaattgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgtccggagtggatggtcatgacc
gtgcttcccgtgctgccgccggacctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgc
cgcctgctcgagctcaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgttgctggacaacggccgtcgcggccgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggcgaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaagtgatccgcgagcatccg
gtgctgttgaaccgtgcgccgaccctgcaccgtctggggatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtaccgccttcaacgccgac
ttcgacggcgaccagatggctgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacatgagccgcgcgcttgagaacaag
aagggtgaaggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgt
atggtcgaactgcacgccaaggtcaaggtccgcatcacccaggtggacgtggacgccgtc
gatggcaagcgcaccagcggcacctcgatcgtggacaccacggtcggtcgtgcgctgctg
agcgaaatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaag
aacatctcgcgtctgatcaactccagctaccgtctgttgggcttgaaggacacggtcgtg
ttcgccgacaagctgatgtacaccggctatgcctatgcaacccgtgccggcgtgtcgatc
ggtatcgacgacatgctgatccccgacgagaagaagggcatcctcaccgaggccgaagcc
gaagtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgctac
aacaaggtcgtggacatctggtcgcggaccagcgagcgcatcgccaaggcgatgatggac
accatcggtaccgaaaaggttgagaacgccaagggcgagaccatcgaccagaagtcgatg
aactcgctgtacatcatggccgactccggtgcgcgtggtagccaggcgcagatccgtcag
ctggccggtatgcgcgggctgatggcgcgtccggacggctcgatcatcgagacgcccatc
aaggcgaacttccgcgaaggtctgaacgtgcaggagtacttcaactccacccacggtgcc
cgtaagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacacgtcgt
ctggtcgacgtggcgcaggacgtggtgatcaccgaaatcgattgcggcaccaccgaaggg
ttgatcatgaccccgatcgtggaaggtggcgacgtggtggagccgttgaaggagcgcgtg
ctgggccgtgttgtggccgaggacgtgtacctgccgggcaacgacgaagagccgatcgtc
acccgcaacacgctgctcgacgaagcctgggtcgccaagctcgaagacgccagcgtgcag
tcggtgaaggtgcgttcgaccatcagctgcgaatcctccttcggcgtgtgcgcacgctgc
tacggccgcgatcttgcacgtggtcaccaggtcaacatcggcgaatcggtcggcgtcatc
gccgcgcagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggt
ggtgcggcatcgcgtgcggctgcggtggacaacatcaccgtcaagaccactggttcggtg
aagttcaacaacctcaagtcggtggcgcatgccagtggctcgttggttgcggtctcgcgt
tctggcgaactgtccgtgctcgatggccatggccgcgagcgcgagcgttacaagctgccg
tacggcaccaccatcaccgccaaggacggcgatgcggtcaaggccggtcaaagcgttgcc
aactgggatccgcataaccacccgatcgtctcggaagtggccggtttcatccgtttcatc
gacttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggtctggcctcg
cgcgaaattaccgacccgaagcgtcgcggtgcgcatgccaaggaactgcgtccgatcgtg
cgtatcgtcgatggcaaggggaatgacctgacgatcccgaacacggatctgccggcgcag
tacctgctgccgccccgctccatcgtcaacctgcaggatggcgccgccgtcggcgtgggc
gacgtggtggcgaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctg
ccgcgcgttgccgatttgttcgaagcacgcaagccgaaggatccggcgatcctggccgag
cgctcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaag
gacaccgatgggtcggaacacgaagagctgatcccgaagtaccgccagatcatcgtgttc
gaaggcgagcacgtcaccaagggcgagacggtggtggacggcgagccgagcccgcaggac
atcctgcgtctgctgggtgtcgaaccgctggccgcgtacctggtcaaggaaatccaggac
gtgtaccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcactcgccag
atgctgcgcaaggtcgagatcgtcgatcagggcaacagcaaattcctcaacggcgagcag
gtcgagcgtcagcgcgtcatcgaggaaaatgcccgcctggtcaagcgcaacgaactgccg
gccaagtacgatccggtgctgctgggtatcaccaaggcgtcgcttgccaccgagtcgttc
atctcggcggcatcgttccaggagaccacccgcgtgttgaccgaggcggccgttcgcggc
acccgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgattccggcc
ggtacgggtctggcgtaccacgccggacgtcgcaaggcctcgggtctgaccgactcggaa
atggaaacgctgtcgggcaagccggcagttgccgaaccggtcgcagctgtggccgacgct
ggcgcggacgaggagtaa
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integrated database retrieval system
