Xanthomonas oryzae pv. oryzicola BLS256: XOC_1055
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Entry
XOC_1055 CDS
T01873
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Pathway
xor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XOC_1055 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xor03021
]
XOC_1055 (rpoA)
03400 DNA repair and recombination proteins [BR:
xor03400
]
XOC_1055 (rpoA)
Enzymes [BR:
xor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XOC_1055 (rpoA)
Transcription machinery [BR:
xor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XOC_1055 (rpoA)
DNA repair and recombination proteins [BR:
xor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XOC_1055 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AEQ95256
UniProt:
G7TF88
LinkDB
All DBs
Position
1034919..1035917
Genome browser
AA seq
332 aa
AA seq
DB search
MTVTANQVLRPRGPQIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVE
IDGVLHEYTTVEGLQEDVLDVLLNLKDVAIRMHSGDSATLSLSKQGPGTVTAADIRTDHN
VEIINGDHVICHLTKDTALNMRLKIERGFGYQPAAARRRPDEETRTIGRLMLDASFSPVR
RVAYAVEAARVEQRTDLDKLVIDIETNGTIDAEEAVRTAADILSDQLSVFGDFTHRDRGA
AKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYIGDLIQKTEVELLKTPNLGKKSLT
EIKEVLAQRGLALGMKLENWPPAGVAQHGMLG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgacggttaccgccaaccaggttctgcgcccccgtggtccgcagatcgaacgtcttacc
gacaaccgtgccaaggtcgtgatcgaacccttggagcgcggttacgggcacacgctgggc
aatgccctgcgtcgtgtgttgttgtcgtcgatcccgggttttgcgatcaccgaggtcgag
attgacggcgtgctgcacgagtacaccacggtcgaagggttgcaggaagacgtgcttgac
gtcctgctgaacctgaaagacgtggcgattcgcatgcacagcggcgacagcgccacgctg
tcgttgtccaagcagggtccgggtacggtcactgcggccgacatcaggaccgatcacaac
gttgagatcatcaacggcgaccacgtgatttgccacctgaccaaagacaccgcattgaac
atgcgtctgaagatcgagcgcggcttcggctatcagccggctgctgcgcgtcgtcgtccg
gacgaagagacccgcaccatcggccgtctgatgctggatgcgtcgttctcgcccgtgcgt
cgcgttgcctacgctgtggaagctgcgcgtgttgaacagcgcaccgacctcgacaagctg
gtgatcgatatcgaaaccaacggcacgatcgatgccgaggaagccgtgcgcaccgccgcc
gacatcctcagcgatcagctgtcggtgttcggcgatttcacccaccgcgatcgcggtgcg
gccaagccggctgccagcggcgtggatccggtgctgctgcgtccgatcgacgaccttgag
ctgaccgtgcgttcggccaattgcctcaaggccgagagcatctactacatcggcgatctg
atccagaagaccgaagtcgagctgctcaagaccccgaatctaggcaagaagtcgctgacc
gaaatcaaggaagtgctggcacagcgcggccttgcattgggcatgaagctggagaactgg
ccgccggccggcgtcgcccagcacggcatgcttggttaa
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