Xanthomonas oryzae pv. oryzicola BLS256: XOC_2111
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Entry
XOC_2111 CDS
T01873
Name
(GenBank) ATP-dependent RNA helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xor03009
]
XOC_2111
Enzymes [BR:
xor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XOC_2111
Ribosome biogenesis [BR:
xor03009
]
Prokaryotic type
rRNA helicases
XOC_2111
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AEQ96257
UniProt:
G7TDC1
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All DBs
Position
complement(2111675..2113051)
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AA seq
458 aa
AA seq
DB search
MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL
LQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEA
HDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQS
LLFSATFPHIIRALAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRFT
PESSVVFCNTRKEVDEVAGSLHEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDV
AARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQALEAEQ
GQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKI
AIYPTRSYVAIARAQVAKALAHLHAGKIKGRRFRVSKL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaattctccgcgctgccgctgtcgccggccctggcccccggcatcgacgccctg
ggctacaccgtcctgactcccatccaggcgcagagcctgccgccgattctgcgggggctc
gatgtcatcgcgcaggcgccgaccggcagcggcaagactgccgcgttcgggcttggcctg
ctgcaaaagctcgaccccgcactgacccgcgcgcaggcgctggtgctctgccccacccgc
gagctggccgatcaggtcggcaagcaactgcgcaaactcgccactggcatccccaacatg
aaattggtggtactcaccggcggcatgccgctgggcccacagctggcctcgctggaagcg
cacgacccgcacgtggtggtcggtacgcccgggcgcatccaggagctggcgcgcaaacgc
gccctgcatctgggcggcgtgcgcaccctggtgctggacgaggccgaccgcatgctcgac
atgggcttcgaagaacccatccgcgagattgccagccgctgcgacaaacaccgccagagc
ctgctgttttcggccacgttcccccacatcatccgcgccctggcgcgcgagatcctgaaa
gacccgattgaaatcaccgtcgaaggcgccgacaacgcgccggaaatcgatcagcagttc
ttcgaggtcgatcccacctatcggcagaaagcggtagccggcttgctgctgcgcttcacc
cccgaatccagcgtggtgttctgcaatacccgcaaggaagtggatgaagtggccggctcg
ctgcacgagttcggcttctccgcgctagccctgcacggcgacatggagcagcgcgaccgc
gatgaagtgctggtgcgtttcgtcaaccgcagctgcaacgtgttggtggccagcgacgtg
gcagcacgcggattggacgtggaagacctctcggccgtggtcaattacgagctgcccacc
gataccgaaacctaccgccatcgcatcggccgcaccgcgcgtgccggcaagcacgggttg
gcattaagcctggtcgccccgcgtgaaaccgcgcgcgcccaagcgctggaagccgaacaa
ggccagccgttgaagtggtcgcgtgcgccactggccaccgcacgccccgcgcagctgccg
caggcggcaatgaccaccttgcgcatcgacggcggcaagaccgacaagctgcgtgccggc
gacatcctcggtgcattgaccggcgaagccggactctcgggcgcggcgatcggcaagatc
gccatctaccccacccgctcctacgtcgccatcgcgcgcgcgcaggtcgccaaggcgctg
gcacatctgcacgccggcaagatcaagggacgccggttccgggtcagcaagctctga
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