Xanthomonas oryzae pv. oryzicola BLS256: XOC_3823
Help
Entry
XOC_3823 CDS
T01873
Symbol
pel
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Pathway
xor00040
Pentose and glucuronate interconversions
xor01100
Metabolic pathways
xor02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
XOC_3823 (pel)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
XOC_3823 (pel)
Enzymes [BR:
xor01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
XOC_3823 (pel)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
AEQ97913
UniProt:
G7TGX2
LinkDB
All DBs
Position
complement(3957014..3958147)
Genome browser
AA seq
377 aa
AA seq
DB search
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYTVKN
AAELKAALSASVGSNGRIIKVSGIIDISEGKPYTKTSDMKSRARLDIPTKTTLIGITSNA
GICEGYTYVKANDVIIRNLTIENPWDPEPVWDPDDGSAGSWNAEYDGLTVEGASNVWVDH
VTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSVFKSHEKNNLIGSSESAS
STDSGKLKVTIHNTLFENVSARAPRVLFGKVHLYNNYHVGGTSNSVYRFSYAHGVGNESK
IFSERNVFEISGVSSCNKIAAGYGGSVYRDQGSLLNGKALSCAWNSNIGWTPPYTYNLLS
VDKVAADVKAKAGAGKL
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgaaattctcgacggcggccgccgcgtcgctgttcgttgggtcgttgctgctc
accggcgttgcctatgccgatgcggcgttagaggttgcaaccacgggctgggcgacccag
aacggcggcaccaagggcggctccaaggcagctgccgccaatatctacaccgtcaagaat
gccgccgagttgaaagctgcattgagcgcaagcgtcggtagcaacggacgcatcatcaag
gtcagcggcatcatcgatatcagcgaaggcaagccgtacaccaagacctcggacatgaag
tcacgtgcgcgcctggatattccgaccaagactaccttgatcggcattaccagcaacgcg
ggaatctgcgaaggctatacgtacgtcaaggccaacgacgtcatcatccgcaacctcacc
atcgaaaatccatgggacccggaaccggtctgggacccggatgacggcagtgccggcagc
tggaatgcggagtacgacggcctgaccgtggaaggcgccagcaacgtgtgggtggaccat
gtcactttcaccgatgggcgtcgtaccgacgatcagaacggcaccgccaatggccgtccc
aagcagcatcacgacggcgcaatggacatcaagaaaggcgccaatttcgtcaccgtctca
tattcggtcttcaagtcgcacgagaagaacaacctgatcggctccagcgaaagtgcatcc
agcaccgacagcggcaagctcaaggtcaccatccacaacaccttgttcgaaaacgtttcc
gcgcgtgctccacgtgtgcttttcggtaaggtgcatctgtacaacaattaccacgtcggt
ggtaccagcaatagcgtgtatcggttctcctacgcgcatggggtcggcaatgaatcgaag
atcttctccgagcgtaatgtgttcgagatcagcggtgtgagcagctgcaacaagatcgcc
gccggctacggtggcagcgtgtatcgcgatcagggctcgctgctcaatggcaaggcgctg
tcgtgcgcgtggaatagcaacatcgggtggacgccgccttatacctacaacttgctctct
gttgataaggtcgctgccgacgtcaaggcgaaagcaggcgcaggcaagctgtaa
DBGET
integrated database retrieval system
