Xanthomonas oryzae pv. oryzicola BLS256: XOC_3880
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Entry
XOC_3880 CDS
T01873
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Pathway
xor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XOC_3880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xor03019
]
XOC_3880
Enzymes [BR:
xor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XOC_3880
Messenger RNA biogenesis [BR:
xor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XOC_3880
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
AEQ97970
UniProt:
G7TH29
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All DBs
Position
4016263..4017645
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AA seq
460 aa
AA seq
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MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHTRRPHGDAPRQAHA
HAGPKKPGGQRSGGPRQANAGAGAGPRDGGRGGQRPSGTR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tatgaaacccccactgcaatccagcagcaggcgatcccgttggtgctggccggtcacgac
ctgctggccggcgcgcagaccggtaccggcaagaccgccgccttcggcctgccgctgctg
cagcacctgggcacctcgccgcagccggtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgaactggccacccaggtgcatgacagcctgcgcggctacagcaag
tacctgcgcattcccagcgcagtgatctacggcggcgtgggcatgggcaaccagctcgac
accctgcgccgtggcgtggacctgctgatcgcctgcccgggccggttgatcgaccatatc
gagcgccgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgaccgc
atgctcgacatgggcttcttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcagaccctgctgttctcggcgaccttcgaagagaacatcaagcagctggcgctg
gagttcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgatggcgcgcgcaagcgcgatctgctgctgcacctg
ctggcgcaggacagccgcgaacagaccctggtgtttgcgcgcaccaagcacggcagcgac
aagctggcgctgttcctggagaagtcgggcatcaagaccgcggccatccacggcaacaag
agccagggccagcgcatgcgtgccctgagcgacttcaaggccggccgcgtgaccgtgctg
gtcgccaccgatatcgctgcgcgcgggatcgatatcgaccagctgccgaaggtcatcaac
tacgacctgccgatggtggccgaggattacgtgcaccgcatcggccgcaccggccgtaac
ggctccaccggcgaggcgatctcgctggtggcgcaggacgaagccaagctgctgcgtcag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcag
acgccgatccgttggggaaacagcgcaccgggtcgcgccgagcagccgggcggcgatcgc
gccccgcgcaagagccacacccgtcgcccgcatggggatgcaccgcgtcaggcgcacgcg
catgccggcccgaagaagccgggtggccagcgcagcggcgggccgcgtcaggccaacgct
ggcgcgggtgcaggccctcgcgacggcggtcgcggtggccagcgtccgagcggtacgcgc
taa
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