Xanthomonas oryzae pv. oryzicola BLS256: XOC_4140
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Entry
XOC_4140 CDS
T01873
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xor03032
]
XOC_4140 (topA)
03400 DNA repair and recombination proteins [BR:
xor03400
]
XOC_4140 (topA)
Enzymes [BR:
xor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XOC_4140 (topA)
DNA replication proteins [BR:
xor03032
]
Prokaryotic type
DNA Topoisomerases
XOC_4140 (topA)
DNA repair and recombination proteins [BR:
xor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XOC_4140 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AEQ98218
UniProt:
G7TJJ7
LinkDB
All DBs
Position
4293994..4296486
Genome browser
AA seq
830 aa
AA seq
DB search
MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKN
EKHVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDKPMQRVVFTEITPR
AIKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFIAREYWSIDAHCRHPSQAFNARLIKLDGQKFEQFTVTDGDTAEAARLRIQQ
AAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVALGDE
GSVGLISYMRTDSVNLSQDALSEIRDVIARDYGTASLPDQPNAYTTKSKNAQEAHEAVRP
TSALRTPAQVARFLSDDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEHVFRASGTT
VVVPGFLAVYEEGKDTKSSEDEDEGRKLPLMKAGDNIPLDRIVTDQHFTQPPPRFTEAAL
VKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSKFLSGHFTRYVDYDF
TAKLEDDLDAVSRGEAEWIPLMEKFWSPFKELVEDKKDSLDKTDAGSVRVLGTDPVSGKE
VSARIGRFGPMVQIGTVEDEDKPTFASLRPGQSIYSISIEDALELFKMPRALGQDKDQDV
SVGIGRFGPFARRGSVYASLKKEDDPYTIDLARAVFLIEEKEEIARNRVIKDFEGSDIQV
LNGRFGPYISDGKLNGKIPKDREPASLTFEEVQQLLADTGKPVRKGFGAKKTTLKKNAVK
DSAPKKTAAKKTTTKTAASKTAAKKAPAKQAAAEKATKRVVKKTLSKAAG
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcacctgctcatcgtcgaatcgcccgccaaggccaagacgatcaataaatac
ctcggcaaggacttcaccgtcctggcctcgtatgggcacgtgcgcgacctggtccccaag
gaaggcgcggtcgatccagacaacggctttgcgatgcgttacgacctgatcgagaagaac
gagaagcatgtcgaagccatcgcgcgtgctgccaagggagccgacgacatctttctggcg
accgacccggaccgcgagggcgaggcgatcagctggcacattgccgagatcctgaaagag
cgcggcctgctcaaggacaagccgatgcagcgggtggtgtttaccgaaatcacaccgcgc
gcgatcaaggaagccatgctcaagccgcgcgcgatcgccgccgacctggtggatgcgcag
caggcgcgccgcgcgctggattatctggtcggcttcaacctgtcgccggtgctgtggcgc
aaggtgcagcgcgggttgtcggccggtcgcgtgcagtcgccggcgctgcgcatgatcgtg
gagcgcgaagaagagatcgaagccttcatcgcgcgcgaatactggtccatcgatgcgcat
tgccggcatccctcgcaggctttcaatgcacggctgatcaagctggacgggcagaaattc
gagcagttcaccgtcaccgacggcgacaccgcagaagcggcgcggctgcgcatccagcag
gccgcgcaaggcgtgctgcatgtgaccgatgtggccagcaaggagcgcaagcgtcgccct
gccccgccgttcaccacttccacgctgcagcaggaagcttcgcgcaagctcgggttcacc
acccgcaagaccatgcaggtggcgcagaagttgtacgaaggtgtggcgctgggcgacgaa
ggctcggtcggcctgatcagctacatgcgtaccgactcggtgaacctgtcgcaggacgcg
ctgtcggaaatccgcgacgtgatcgcgcgcgattacggcaccgcctcgctgccggaccag
cccaacgcctacaccaccaaatccaagaacgcgcaggaagcccacgaagcggtgcgtccg
acctcggcactgcgtacgccggcacaggtggcgcgcttcctgtcagacgacgagcgccgc
ctgtatgagttgatctggcgccgcgccgtggcctgccagatgattccggccacgctcaac
accgtcagcgtggatctgtcggccggaagcgagcacgtattccgcgccagcggcaccacg
gtggtggtccccggcttcctggccgtctatgaggaaggcaaggacaccaagagcagcgag
gacgaggacgaaggccgcaagttgccgctgatgaaggccggcgacaacatcccgctggac
cgcatcgtcaccgaccagcacttcacccaaccgccgccgcgcttcaccgaagcggcgctg
gtcaaggcgctggaggaatacggcatcggccgtccctccacctacgcctcaatcatccag
accctgcagttccgcaagtacgtcgagatggaaggccgcagcttccgccccaccgacgtc
ggccgtgcggtgtccaagttcctgtcagggcatttcacccgctacgtggattacgacttc
accgccaagctcgaagacgacctggatgcggtctcgcgtggcgaggcagagtggatcccg
ttgatggaaaagttctggagcccgttcaaggaactggtcgaggacaagaaggattcgctg
gacaagaccgacgccggcagcgtgcgcgtgctcggcaccgacccggtcagcggcaaggaa
gtcagcgcgcgcatcggccgcttcggcccgatggtgcagatcggcaccgtggaagacgaa
gataagcccacgtttgcgtcgctacgtccgggccagagcatctattcgatctcgatcgaa
gatgccctggaactgttcaagatgccgcgcgcactgggccaggacaaggaccaggatgtc
agcgtgggcatcggccgcttcggcccgtttgcgcgccgtggcagcgtgtatgcgtcgctg
aagaaggaagacgacccgtacaccatcgacctggcgcgtgcggtgttcctgatcgaagag
aaggaagagattgcgcgcaaccgcgtgatcaaggacttcgaaggcagcgacatccaggtg
ctcaatggccgcttcggtccgtacatcagcgatggcaagctcaacggcaagatccccaag
gatcgcgagccggcgtcgctgacgttcgaagaagtgcagcagttgctggccgataccggc
aagccggtgcgcaagggctttggcgccaagaagaccacgctgaagaagaacgcggtcaag
gattcggcgccaaagaagaccgcagccaagaaaaccacgaccaagacggcggccagcaag
accgctgcaaagaaggcgccggccaagcaagcggctgccgagaaagcaaccaagcgcgtg
gtcaagaagaccctgagcaaggccgcaggctaa
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