Xanthomonas oryzae pv. oryzae PXO86: AZ54_05925
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Entry
AZ54_05925 CDS
T03765
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
xoy
Xanthomonas oryzae pv. oryzae PXO86
Pathway
xoy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xoy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AZ54_05925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xoy03021
]
AZ54_05925
03400 DNA repair and recombination proteins [BR:
xoy03400
]
AZ54_05925
Enzymes [BR:
xoy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AZ54_05925
Transcription machinery [BR:
xoy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AZ54_05925
DNA repair and recombination proteins [BR:
xoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AZ54_05925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AJQ82224
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All DBs
Position
1188669..1189667
Genome browser
AA seq
332 aa
AA seq
DB search
MTVTANQVLRPRGPQIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVE
IDGVLHEYTTVEGLQEDVLDVLLNLKDVAIRMHSGDSATLSLSKQGPGTVTAADIRTDHN
VEIINGDHVICHLTKDTALNMRLKIERGFGYQPAAARRRPDEETRTIGRLMLDASFSPVR
RVAYAVEAARVEQRTDLDKLVIDIETNGTIDAEEAVRTAADILSDQLSVFGDFTHRDRGA
AKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYIGDLIQKTEVELLKTPNLGKKSLT
EIKEVLAQRGLALGMKLENWPPAGVAQHGMLG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgacggttaccgccaaccaggttctgcgcccccgtggtccgcagatcgaacgtcttacc
gacaaccgtgccaaggtcgtgatcgaacccttggagcgcggttacgggcacacgctgggc
aatgccctgcgtcgtgtgttgttgtcgtcgatccccggttttgcgatcaccgaggtcgag
atcgacggcgtgctgcacgagtacaccacggtcgaagggttgcaggaagacgtgcttgac
gtcctgctgaacctgaaagacgtggcgattcgcatgcacagtggcgacagcgccacgctg
tcgttgtccaagcagggtccgggtacggtcactgcggccgacatcaggaccgatcacaac
gttgagatcatcaacggcgaccacgtgatctgccacctgaccaaagacaccgcattgaac
atgcgcttgaagatcgagcgcggcttcggctatcagccggctgctgcgcgtcgtcgtccg
gacgaagagacccgcaccatcggccgtctgatgctggatgcgtcgttctcgcccgtgcgt
cgcgttgcctacgctgtggaagctgcgcgtgttgaacagcgcacggacctcgacaagctg
gtgatcgatatcgaaaccaacggcacgatcgatgccgaggaagccgtgcgcaccgccgcc
gacatcctcagcgatcagctgtcggtgttcggcgatttcacccaccgcgatcgcggtgcg
gccaagccggctgccagcggcgtggatccggtgctgctgcgcccgatcgacgacctggag
ctgaccgtgcgttcggccaattgcctcaaggctgagagcatctactacatcggcgatctg
atccagaagaccgaagtcgagctgctcaagaccccgaatctgggtaagaagtcgctgacc
gaaatcaaggaagtgctggcacagcgcggccttgcattgggcatgaagctggagaactgg
ccgccggccggcgtcgcccagcacggcatgcttggttaa
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