Xanthomonas oryzae pv. oryzae PXO86: AZ54_14050
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Entry
AZ54_14050 CDS
T03765
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xoy
Xanthomonas oryzae pv. oryzae PXO86
Pathway
xoy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xoy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZ54_14050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoy03019
]
AZ54_14050
03016 Transfer RNA biogenesis [BR:
xoy03016
]
AZ54_14050
Enzymes [BR:
xoy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AZ54_14050
Messenger RNA biogenesis [BR:
xoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AZ54_14050
Transfer RNA biogenesis [BR:
xoy03016
]
Prokaryotic type
tRNA degradation factors
AZ54_14050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_11
RNase_II_C_S1
HTH_20
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AJQ83576
LinkDB
All DBs
Position
complement(2879236..2881764)
Genome browser
AA seq
842 aa
AA seq
DB search
MTKKNTPDSNRPSRRKSTNAGESSTAEQQKLPGWMPDFLVRAAAGASTKSANKRAADKAS
NAASQPPAALPTPPAPRAPHPRKSGPPAPPPERFQTAAPPAAAEFKDPHADREALRYAEP
IASREAILQLLEACDGPQTAEEIAEQLNLSDRIDALGKRLAAMVREAQLVQNRRGGYAPV
QQTSLIAGVVIANPEGFGFLKPDGGGDDLFLPPFEMRKVMHGDRALANVTGIDRRGRREG
AIARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQIAPDGIGEAREGQLVVCELIAP
PDARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVLDEAAAVPLVVEPQMIGG
RVDLRQMPLVTIDGEDAKDFDDAVYCEPNADGFRLVVAIADVSNYVRPGTPLDDEAQKRA
TSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGGDGEVTGSRFYEAVMNSHAR
LTYNQVWKAVGEGDADTKAFIGPLLPQVQRLHQLYQVLSKARTHRGAIEFETSEVRFVLD
NTGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLSMHVPAPYRVHERPPESKYEDLLE
FLKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLESVLLRSQSLAVYSPENNGHFGLA
LEAYAHFTSPIRRYPDLLVHRALKHALTGASPEKFIYTPRQMAALSLQCSERGRRADEAE
REVDERYRAAWMEKHVGGQFDGVISGVTGFGLFVELTQSKVNGLVHVTQLPQDYYQFDPI
RKTLSGERRGREFRLGDPVRVLVLKASMEERKIDFRLAEEGAAPEAPLPLRETSTKRKKK
SS
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaaaacaccccagattccaaccggccgagtcgccgtaaatccaccaacgca
ggcgagtccagcaccgccgagcagcagaagttgccaggctggatgcccgacttcctggtc
cgtgccgccgccggcgcgtcgaccaagtccgccaacaagcgcgctgccgacaaagcttcc
aatgctgcgtcgcaaccgccggccgccctgccaacgccgccggccccgcgcgcaccgcat
ccgcgcaagagtggcccacctgcgccgccgccggaacgcttccagaccgccgcgccgccc
gctgctgccgaattcaaggatccgcacgccgaccgcgaggccctgcgttatgcagagccg
atcgccagtcgcgaagcgatcctgcagctgcttgaagcctgcgacggcccgcagaccgct
gaagaaattgccgagcagctcaatctgagcgatcgcatcgatgcactgggcaagcgcctg
gccgcgatggtgcgcgaagcgcaactggtgcaaaaccgccgcggcggctatgcgccggtg
cagcagaccagcctgatcgccggggtggtgatcgccaatccggagggcttcggtttcctc
aagcccgacggcggtggcgatgacctgttcctgccgccgttcgagatgcgcaaggtcatg
cacggcgaccgcgcgttggccaatgtcaccggcatcgaccgccgcggccgtcgcgaaggt
gcgattgcgcgcgtgcttgagcggggcatgtcgcgcatgctggggcgctttttctatgag
cacggcgtggcttacgtcgatcccgatgacaagcgcatccagcgcaatgtgcaaatcgcc
ccggacggtatcggcgaggcgcgcgaaggccagttggtggtttgcgaactgatcgcgccg
ccggacgcgcgccgcccggcgatcggcaagatcatcgcggtgcttggcgacaagctgacc
ccgtcgctggtggtggaaatggccatccacggccacgaacttccgcacgagttcccgcag
gaagtgctggacgaagcggcggctgtgccgttggtggtcgagccgcagatgatcggtggg
cgcgtggatctgcggcagatgccgctggtcaccatcgacggcgaagacgccaaggatttc
gacgacgcggtgtattgcgaacccaacgccgacggcttccgtctggtggtggcgatcgcc
gacgtgtccaactatgtgcgtcccggcacgccgctggatgacgaagcgcaaaagcgcgcc
acctcggtgtatttcccgggattcgtggtgccgatgctgccggagacgctgtccaacggc
atctgctcgctgatgcccaaggtcgatcgcatgtgtttcgtctgcgacatgcaggtggga
ggcgatggcgaagtgaccggctcgcgtttttacgaagcggtgatgaactcgcatgcgcgc
ctgacctacaaccaggtgtggaaggcggtgggcgaaggcgatgccgacaccaaggccttc
atcggcccgttgctgccgcaagtgcagcgtctgcatcagctgtaccaggtgctgtcgaag
gcgcgtacgcaccgtggtgcgatcgaattcgaaacctccgaagtgcgcttcgtgctcgac
aataccggcgaggtcacccaggccggcatgctggtgcgcaacgatgcgcacaagctgatc
gaagaatgcatgatcgccgcgaatgtcgaggcggcccgctacctgctgagcatgcatgtg
ccggcgccgtaccgtgtgcacgagcggccgccggagagcaagtacgaagacctgctggag
ttcctcaaggaattccagctgagccttcccgcatggagcaaggtgcgccccggcgattac
accaagctgctgaagaaggtgcgtgcgcgtccggacgcggcgttgctggaatcggtgctg
ctgcgcagccagagcctggcggtgtattcgccggaaaataacgggcacttcggtctggcg
ttggaggcgtacgcgcacttcacctcgccgatccggcgttacccggatctgctggtgcat
cgcgcgctcaagcacgccttgaccggtgccagcccggaaaaattcatctacaccccgcgt
cagatggcggcgttgtcgctgcagtgctccgaacgcggccggcgtgccgacgaagccgag
cgcgaagtggacgagcgctatcgcgccgcgtggatggaaaagcatgtgggtggccagttc
gacggcgtgatcagcggcgtgaccggattcggtctgttcgtggagttgacgcagtccaag
gtcaatggcctggtgcatgtcacccagctgccgcaggactattaccagttcgacccgatc
cgcaagacgctcagtggcgaacgccgtggtcgcgaattccgtctgggcgacccggtgcgc
gtgctggtgctcaaggccagcatggaagaacgcaagatcgacttccgcctggccgaagag
ggtgcagcgcccgaagcgccgctgccgctgcgcgaaacgtcgaccaagcgcaagaagaaa
tcgtcctga
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