Xanthomonas oryzae pv. oryzae PXO86: AZ54_15880
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Entry
AZ54_15880 CDS
T03765
Name
(GenBank) DEAD/DEAH box helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xoy
Xanthomonas oryzae pv. oryzae PXO86
Brite
KEGG Orthology (KO) [BR:
xoy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoy03019
]
AZ54_15880
Enzymes [BR:
xoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AZ54_15880
Messenger RNA biogenesis [BR:
xoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AZ54_15880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
nSTAND3
AAA_30
SRP54
ResIII
NACHT
Cas3-like_C_2
AAA_25
T2SSE
nSTAND_NTPase5
AAA_23
ABC_tran
TsaE
Motif
Other DBs
NCBI-ProteinID:
AJQ83896
LinkDB
All DBs
Position
complement(3285327..3289448)
Genome browser
AA seq
1373 aa
AA seq
DB search
MSAIDSDLANTLRERRRAVDGAMSHDRGRLLGLWSRWQGKPGNPQVRDAFEQALAASQAQ
RQARAEQQPAITLDNQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVAEELKTPLGTIVGFQVRFTDRVSEQSRIKFMTDGILLA
EIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQH
FDNAPVINVEGRTFPVEVRYRPLEGDTGDSDDGEHSSGRDGERSVNDAIVAAIDEITRID
PRGDVLMFLPGEREIRDAHQALERRKYRETEVVPLYARLSAADQDRVFNPGPRRRLVLAT
NVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGIC
YRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQ
LLELGAIDAQRRLTATGCQMARLPVDVKLARMLVAAQQHGCLREMIIIAAFLGIQDPRER
PAEAREAADNAHALFADVRSEFVGILRLWDAYRQVHEDLTQSKLRDWCNRHFLGFLRMRE
WRELHRQLRLLCEELGWSEEPANVMLAPLLAGASAPAREDGHNANRPTRGQLHRAARLAR
EGKPDPNTAPVQHPPAATNKQAEPAEASALSSERERAAAYQSLHRALLAGLPTQIGHRTE
KGDYLAARQRRFVPFPGSALARKPPPWIVAATLLDTQKVWGMTNAAIEPDWAIAELPHLL
ARKHFDAHWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPAAAHDLFVRQGLVTGEIN
TRAAFVADNLKVLEQAREEEAKLRRAGIVADEDWQARWYLDRIPAELHSASGLDAWWKSL
PPDKRRSLHWSLNDVLPGEGCEADRFPKYFPLGDARLPLHYRFEPGAIDDGVTLDVPLHL
LNALDPARLSWLAPGFVADKASALIRSLPKAQRRNYVPAPDFGRAFYEAFNVASADDIRG
ELARFLTKATGTHVAALDFDEQALDTHLLMNLRVRDDDGKVLDESRDLDGLRARFGERAG
QAFAARAGRALAAEGLRDFPTAPIPEQVAGEAGVPAYPALVDQGDNAALRIFADRNEAAR
AHPRGVRRLLEVALADKIKQARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLADG
LGAIRDPGAFAQRRDDAIKRLFGEAMERLTLAESILGAVAELKPLLEAPLMGWARGNLDD
MEQQLRALVHAGFLRDTPADALANYPRYLRAMILRTERAKRDPARDQARMLELKPFVDAV
EAAAAHGLQNREDWQALRWDLEELRVSVFAQELGAKSGVSAKKLSQRVAALRS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgactccgaccttgccaacaccttgcgtgagcgccgccgcgctgtggat
ggcgcgatgagccacgaccgtggccgcttgctgggcctatggtcgcgctggcagggcaag
ccgggcaacccgcaggtacgcgatgcgttcgagcaggcgctggcggcatcgcaggcgcag
cgccaggcgcgggccgagcagcagccggccatcacgctggacaaccaattgccgatcgcg
cgcgaggccgagcgtatcatcgcgttgatccgtgatcatcaagtggtggtcatcgccggc
gaaaccggctcgggcaagaccacccagctgcccaagctgtgtctggcggcagggcgcggg
gccgccgggatgatcggttgcactcagccgcgccggatcgccgcgcgtgcggtggctgcg
cgcgtggcggaagagttgaagacgccactaggtaccatcgttggcttccaggtgcgcttc
actgaccgggtcagcgagcagtcgcgcatcaagttcatgaccgacggcatcctgttggcg
gaaatcgccagcgaccgttggctgtcggcctacgacaccatcatcgtggacgaggcgcac
gagcgcagcctcaacatcgatttcctgctgggctatctcaaacagttgctgcacaagcgc
tccgatctcaagttgatcgtcacctcggccaccatcgataccgagcgcttcgcacagcat
ttcgacaatgcgccggtgatcaatgtggaaggccgcaccttcccggtcgaagtgcgctac
cgcccgctcgaaggcgatacgggcgacagcgacgacggcgaacacagcagcggccgcgac
ggcgagcgcagcgtcaacgatgcgattgtggcggccatcgacgagattacccgcatcgac
ccgcgcggcgatgtgctgatgttcctgccgggcgagcgcgaaattcgcgatgcgcaccag
gcgttggaacggcgcaaataccgagagaccgaagtggtgccgttgtacgcgcggctgtcg
gcggccgatcaggaccgcgtgttcaatcccggcccgcggcgacgcctggtgctggccaca
aacgtggccgaaacctcgttgaccgtgccgcgcattcgctatgtggtggatccggggctt
gcacgcgtcaaacgctacagtccgcgccagaagctggaccgtctgcatatcgagccgatc
tcgcaggccagcgccaaccagcgcatgggccgctgtgggcgtatcgccgagggcatttgc
taccggctgtatgccgaagcggattttgccgcgcgcccggcgtttaccgacccggagatc
cggcgctcgtcgttgtccggcgtgatcctgcgcatgctgcagctggggctgggcagaatc
gaagacttcccgttcctggaagcgcccgacgaacgcgcggtggccgatggctggcaacag
ctgctggagttgggcgcgatcgatgcgcagcggcgtctgaccgccactggctgccagatg
gcgcgcctgccggtggacgtcaagctggcgcgcatgctggtggccgcccagcagcacggt
tgtctgcgcgagatgatcatcatcgccgcattcttgggcatccaggacccgcgcgagcgc
ccggcggaagcgcgcgaggctgccgataacgcgcacgcgctgtttgccgatgtgcgctct
gaattcgtgggcatcctgcgcttgtgggatgcgtaccggcaggtgcatgaagatctcacc
cagtccaagttgcgcgactggtgcaaccggcatttcctcggctttttgcgcatgcgcgag
tggcgcgagttgcatcgacagctgcggctgctgtgcgaggagctcggctggagcgaagaa
ccggccaatgtgatgctggcgccattgctggccggtgccagcgcgcctgcccgcgaggac
ggccataacgccaaccggcccacgcgcggccagttgcaccgtgccgcgcgactggcgcgc
gaaggcaagccggatccgaacacggcgcctgtgcaacacccgcctgctgcgacgaacaag
caggccgagcctgccgaagcatctgcgcttagcagcgagcgcgaacgtgcggcggcgtat
cagtcgttgcatcgcgcgctgctggcgggcctgccgacgcagatcggtcatcgcaccgag
aagggcgattatctggctgcgcggcaacgccgcttcgtgccgtttccgggctccgcattg
gcgcgcaagccgccgccttggattgtggctgccacgttgctggacacgcaaaaagtatgg
ggcatgaccaatgccgcgatcgagccggattgggccatcgccgagctgccgcatctgctg
gcgcgcaagcacttcgacgcgcattggtcgcgtgcgcaggggcaggtggtggcgtcggaa
cagatcagcctgttcgggctggtgctggcgccgaaaaagccggtgcatttcggcaagatc
gacccagccgcggcgcatgacctgttcgtgcgccaaggcctggtgaccggcgaaatcaac
acgcgtgccgcattcgtggccgacaatctcaaggtgctagagcaggcgcgtgaagaggag
gccaagctgcgtcgcgccggcatcgttgccgacgaagactggcaggcgcgctggtatctg
gatcgcattccagccgagctgcattcggccagtggtctggatgcttggtggaagagcttg
ccgccagacaagcgccgcagcctgcattggtcgttgaacgatgtgctgccgggcgagggc
tgcgaagccgatcgctttccgaaatatttcccactcggcgatgcgcgcttgccgttgcat
taccgcttcgagccgggggccatcgacgacggcgtgaccctggatgtgccgttgcacctg
ctcaatgcgctggatccggcgcgcctgtcgtggctggcgccgggcttcgtcgccgacaag
gcatctgcgttgattcgcagcctgcccaaggcgcagcgccgcaactatgtgccggcaccg
gatttcggacgtgcgttctacgaggcgtttaacgttgcctcggccgacgatatccgcggc
gagctggcgcgctttctgaccaaggccaccggtacgcatgtggcagcgctggatttcgat
gagcaggcgctggacacgcatttgctgatgaacctgcgcgtgcgcgacgacgacggcaag
gtgctggacgagtcgcgcgatctggacgggctgcgcgcgcgctttggcgagcgtgccggg
caagcattcgccgcgcgggccggacgcgcgctggccgccgagggcctgcgtgattttccg
acagcgccgattcccgagcaggtggccggcgaggccggcgtgccggcgtacccggcgctg
gtggatcagggcgacaacgcggcgctacgcatcttcgccgaccgcaacgaggctgcgcgg
gcgcatccgcgcggcgtgcggcgcttgctggaagtcgcattggccgacaagatcaaacag
gcgcgcaagcaactgccggtgtcgcccaagaccgggctgctgtatgcggccatcgaatcg
caggaacgcctgcgtggcgatctggtcgatgccgcgctcaatgccgtgctggccgatggc
ctgggcgccattcgcgaccccggcgcattcgcgcagcgccgcgacgatgcgatcaagcgg
ctgttcggcgaagcgatggagcgcttgacgctggccgaaagcatcctgggcgcggtggcc
gaactcaagccgttgctggaagcgccgttgatgggctgggcgcgcggtaatctggacgac
atggagcagcaactgcgcgcgctggtgcatgcaggcttcctgcgcgacacgccggccgac
gcattggccaattatccgcgctacctcagggcgatgatcctgcgcaccgagcgcgcaaag
cgcgatccggcacgcgaccaggcgcgcatgctcgagctcaaaccgttcgtggatgcagtg
gaagccgccgccgcgcacggtttgcagaaccgcgaagactggcaagcgctgcgctgggat
ctggaagaactgcgcgtgtcggtgtttgcgcaggagctgggtgcaaagtccggcgtctcg
gcgaaaaaactgtcgcaacgtgtcgctgcactgcgcagttga
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