Xanthomonas oryzae pv. oryzae PXO86: AZ54_15890
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Entry
AZ54_15890 CDS
T03765
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xoy
Xanthomonas oryzae pv. oryzae PXO86
Pathway
xoy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xoy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZ54_15890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xoy03019
]
AZ54_15890
03400 DNA repair and recombination proteins [BR:
xoy03400
]
AZ54_15890
Enzymes [BR:
xoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AZ54_15890
Messenger RNA biogenesis [BR:
xoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AZ54_15890
DNA repair and recombination proteins [BR:
xoy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AZ54_15890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJQ83898
LinkDB
All DBs
Position
3290652..3292448
Genome browser
AA seq
598 aa
AA seq
DB search
MSSSAHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIG
IVVSPLIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERLLT
QRFLSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHIPRMALTATADPPT
QREIAERLDLVDARHFVSSFDRPNIRYTVVQKDNARKQLQEFLGRYRGSAGIVYAMSRRK
VEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMGIDKPDVRFV
AHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAEERKRLERAK
LDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPAAAWDATVASQKALSCVYRSG
QRFGVGHLIDILRGSENERIKQLAHDQLSTYGIGRDLDERTWRGVFRQLVAASLLEVDSE
GHGGLRLTDASRQVLKGERQVMMRRENPAAGRDRSAQRTGLPVQAQDLVLFNALRGLRAE
LAKQQNVPAFVIFHDSTLRNIAEQRPTSIDALSRVGGIGGGKLARYGAQLIEIVREQG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttccgcacacgaattgctcagccgcgtcttcggttacgacgacttccgcggc
ccacagcaggccatcgtcgaacacgtcgctgccggtaacgatgctctggtgctgatgcct
accggcggcggcaaatcgctgtgctaccaagtaccggcgctgctgcgcgatggcatcggc
atcgtggtttcgccgctgatcgcgctgatgcaggatcaggtcgaagccttgcgccagctc
ggcgtgcgcgccgaatttctcaattccacgctcgatgcggagaacgcccagcgtgtggaa
cgtgccctgctgtccggcgatctggatctgttgtacgtcgcgccggaacggctgctgacc
cagcgcttcctctcattgctggaacgcagccgcatcgcgctgttcgccatcgacgaggcg
cattgcgtctcgcaatggggccatgatttccgcccggaataccgccagctcaccgtactg
cacgagcgctggccacacatcccgcgcatggccctgaccgccaccgccgacccgccgacc
cagcgcgaaattgccgagcgcctggacctggtggacgcgcgccatttcgtcagttccttc
gaccgccccaacatccgctacaccgtggtgcaaaaggacaacgcgcgcaaacagctgcag
gaattcctgggccgttatcgcggctcggccggcatcgtttatgcgatgtcgcggcgcaag
gtcgaagaaaccgcgcagcaactgtgcgcacaaggattcaatgcgctgccctatcacgcc
ggcctgccagccgaggtgcgcgcagaaaaccaacgccgtttcctgcgcgaggacggcatc
atcatggccgccacgatcgccttcggcatgggcatcgacaagccggacgtgcgcttcgtg
gcgcacgtggatctgcccaagtcgctggaaggctactaccaggaaaccggccgcgccggt
cgcgacggcgaccctgccgaagcctggctttgctacggcctgggcgatgtggtgctgctc
aagcagatgatcgaacaaggcgaagccgccgaagagcgcaagcgtctggagcgcgccaag
ctcgatcacctgctgggttactgcgaatccatgcaatgccgtcgccaggtactgctggcc
ggtttcggcgagacctatcccaaaccctgcggcaactgcgacaactgcctgacgccggct
gcggcctgggacgccacggtggcctcgcagaaagcgctcagttgcgtctaccgcagcggc
caacgcttcggcgtgggtcatctgatcgacatcctgcgcggcagcgaaaacgagcgcatc
aaacagttggctcacgatcaactgagcacctacggcatcggccgcgacctggacgaacgc
acctggcgcggcgtgtttcgccagctggtggcagccagcctgctggaagtggacagcgaa
ggccacggcggcctgcgcctcaccgatgccagtcgccaggtgctcaagggcgagcgccag
gtcatgatgcgccgcgaaaacccagccgccggacgcgaccgcagcgcacagcgcaccggc
ctgccagtgcaggcgcaggatctggtgctgttcaacgccttgcgcggcctgcgcgcagag
ttggcgaagcaacagaacgtgccggcctttgtcatcttccacgacagcaccttgcgcaac
atcgccgaacaacggcccacgagcatcgacgcattgtcgcgggtaggcggcatcggcggc
ggcaagctggcccgctacggcgcgcagttgatcgagatcgtgcgcgaacagggctga
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