Xanthomonas oryzae pv. oryzae PXO86: AZ54_21995
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Entry
AZ54_21995 CDS
T03765
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
xoy
Xanthomonas oryzae pv. oryzae PXO86
Pathway
xoy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xoy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AZ54_21995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xoy03021
]
AZ54_21995
Transcription machinery [BR:
xoy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AZ54_21995
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AJQ84935
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Position
complement(4518002..4519876)
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AA seq
624 aa
AA seq
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MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHE
VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEA
DAAAAALAAAGPVAVDEDALDEDDDEDGDDAAAEEEVGPTGPDPVEVATRMQNLANEYAK
FKKVYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHL
ATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIISEQQGSMEMEKA
SYLTLGEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM
LQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVES
PIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSEQLRSFLDID
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccagcaatccgacatcaagctactgatcagcaagggcctg
gaacagggctatctgacctacgccgaagtcaatgaccatctgcccgacgacctcgtcgac
ccggagcagatcgaagacatcatcagcatgatcaacggcatgggcatcgatgtccatgaa
gttgcacccgatgccgaaaccctcttgctcaacgatggcaacaccggcaaccgcgaggtt
gacgacaccgccgccgaagaagctgccgccgcgctgaccgcgctcgacaccgaaggtggc
cgcaccaccgacccggtgcgcatgtacatgcgcgaaatgggcaccgtcgagctgctgacc
cgcgaaggcgaaatcgccatcgccaagcgcatcgaagaaggcctgagccaggtccaggca
gcattgggcgtgttcccgctgtcgaccgaaatgctgctggccgattacgaagcgcacaag
gaaggcaagaagcgtctggccgagatcgtggtcggcttcaacgacctgatcgaagaagcc
gacgccgccgccgccgcgctggctgccgctggtcccgtcgctgtcgacgaggatgcgctg
gatgaagacgacgacgaagacggcgatgacgccgccgccgaagaagaggtcggcccgacc
ggtccggacccggttgaagtcgccacgcgcatgcagaacctggccaacgaatacgccaag
ttcaagaaggtctatgccaagaacggcgccgagcacaagctggtggtcaaggcgcgcgaa
gacatggccgccatcttcaccacgctcaagctgccgctgccgctgaccgacgcgctggtc
acccagctgcgtggcgtggtcaacggcatcaaggaccacgagcgcaaggtgctgcacctg
gccaccaccgtggcccgcatgccgcgcaaggatttcatccgctcctgggaaggcaatcag
accaacctggaatgggtggaagatgcactcaagcgcaagcagaagtggtcgtcggcgctg
cgcgacgtcaaggatcagatcatctccgagcagcagggctcgatggagatggaaaaggcc
agctatctgacgctgggcgagatcaaagagatcagccgtgcgatggcctatggcgaagcc
aaggcgcgcaaggccaagaaggaaatggtcgaagccaacctgcgtctggtgatctcgatt
gccaagaagtacaccaaccgcggcctgcagttcctcgacctgatccaggaaggcaacatc
ggcctgatgaaggccgtggacaagttcgaataccgtcgcggttacaagttctcgacgtat
gcaacgtggtggatccgtcaggccatcacccgttcgatcgccgatcaggcgcgcaccatc
cgtatcccggtgcacatgatcgaaacgatcaacaagctgaaccgcatttcccgccagatg
ctccagcagtttggtcgcgaggcgacgccggaggaattggccaaggaaatggacatgccc
gaggacaagattcgcaaggtgatgaaaatcgccaaggagccgatctcgatggaaaccccg
atcggcgacgacgaggattcgcatctgggcgacttcatcgaggacaccaatgtggagtcc
ccgatcgacaacaccaccaacatcaatctctccgagacggtgcgtgacgtgttggccggc
ctcaccccgcgcgaggccaaggtgctgcgcatgcgcttcggtatcgatatgaacaccgat
cacacgttggaagaggtcggtaagcagttcgatgtcacccgcgagcggattcgtcagata
gaggccaaggcattgcgcaagctgcgtcacccgagccgctcggaacagctgcgctcgttc
ctggatatcgactga
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