Xanthomonas oryzae pv. oryzae PXO86: AZ54_23625
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Entry
AZ54_23625 CDS
T03765
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
xoy
Xanthomonas oryzae pv. oryzae PXO86
Pathway
xoy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AZ54_23625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xoy03400
]
AZ54_23625
Enzymes [BR:
xoy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AZ54_23625
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AZ54_23625
DNA repair and recombination proteins [BR:
xoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AZ54_23625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AJQ85201
LinkDB
All DBs
Position
complement(4856992..4857807)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETTLRGLSPHLVGQRIHGVILRRPDLRWPIPEQIERLLPGATITNVRRRAKYL
LIDTDAGGSALLHLGMSGSLRVLPGDTLPRAHDHVDISLQNGRVLRFNDPRRFGCLLWQS
DIQAHELLAALGPEPLSEAFTGDYLHALAYGRRAPVKTFLMDQAVVVGVGNIYAAESLHC
AGISPLREAGKVSLDRYRRLAAAVKDILSYAIRRGGTTLRDFISPDGAPGYFEQELTVYG
REGEPCKQCGRVLKHAMIGQRATVWCGSCQR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttgcccgaggttgaaacaacgctgcgtggcttgtcgccgcacctggttggg
caacgcatccatggcgtcatcctgcgtcgacctgatttgcgctggccgattcctgagcag
atagagcgtctgcttcccggcgccaccatcaccaatgtccgacgccgtgcgaaatactta
ctgatcgacacggatgcgggcggcagcgcattgctgcatttggggatgtccggaagcctg
cgggtgctacctggcgatacgttgccgcgggcgcatgaccacgtggatatcagtttgcaa
aatggacgcgtcctgcgcttcaacgatccacgtcgctttggctgtttgctgtggcaatcc
gacatccaggcgcatgaattactcgctgcgcttggtccagaaccattatcggaagcattt
actggcgattatctgcacgcgcttgcatatggtcggcgtgctcccgttaaaacctttctg
atggatcaggcagtggttgtcggcgttggcaatatctatgctgccgaaagcctgcattgc
gctggaatcagccctctgcgcgaggctggaaaggtatcactggatcgttataggcggctg
gctgcagcggtcaaggacatcctgtcgtacgccatccgacgcggcggtactaccttgcgt
gatttcattagcccggacggtgcgcccggttatttcgaacaggagcttaccgtctacggc
cgcgaaggcgagccctgcaaacaatgtggacgagtgttgaagcacgcgatgatcggccaa
cgcgccacggtgtggtgtgggagttgtcagcggtaa
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