Xanthomonas oryzae pv. oryzicola CFBP7342: BE73_11350
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Entry
BE73_11350 CDS
T03868
Name
(GenBank) RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
xoz
Xanthomonas oryzae pv. oryzicola CFBP7342
Pathway
xoz02020
Two-component system
xoz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xoz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BE73_11350
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BE73_11350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xoz03021
]
BE73_11350
Transcription machinery [BR:
xoz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BE73_11350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_IclR
HTH_23
HTH_Crp_2
Sigma70_r4
HTH_31
HTH_38
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AJQ87605
LinkDB
All DBs
Position
complement(2393254..2394657)
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AA seq
467 aa
AA seq
DB search
MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADNGDEAT
TNDDGASDIAAFDELPESTMWDVQSSSWNDGDDDRMQRVAAGESTDPHVRILRELALDLD
EAALGAAAFWLEQTDDAGYLTEALPMLQQLGATRLGMTVQAVEAIRQRLLHGDPAGLAAC
DLRECLQAQLSALPGRVPARHLAARILDGDLELLAAHDYAVLAGAHDAEVDDTREAVRLI
LSLQPRPGDDLLQESNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALADAGEA
AQPLRDMLQEARWLTRGLSMRYETLLRATRAIVERQAAFLARGEEAMAPLTLKEIADEIG
MHESTISRITTGKYIQTPRGTFELKHFFAVRLEGASVSGQAVKAMVRRLIESEPAGRPLA
DEAIAGLLSRQGVHIARRTVAKYREQLDIAPARERRRTTKPLLARAG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgaccatttccgcccagcttggccagcaactgcacctcaccccgcagttgttg
cagtcgatccgtctattgcaattggacggcatgcagttggaactggaaatccgtcgtgcg
ctggaaaccaatccgttgctggagttggaagagctggccgataacggggacgaggccacc
accaacgacgatggcgccagcgatatcgccgcgttcgacgagctgccggaaagcacgatg
tgggacgtgcagagcagcagttggaacgatggcgacgacgatcgcatgcagcgcgtagcc
gccggcgagtccaccgacccgcacgtgcgcatcctgcgcgaactggcgctggatctggac
gaggcggcgttgggggccgccgcgttctggctggagcagaccgacgacgccgggtatctg
accgaagcgctgcccatgctgcagcagctgggtgccacccgtctgggtatgaccgtgcag
gccgtggaagcgatccgtcagcgtctgctgcacggtgacccggccggcctggccgcctgc
gatctgcgcgagtgtctgcaagcgcagctgagtgccctgcccggccgtgtgccggcacgc
cacctggcggcgcgcatccttgacggcgatctggagctgctggccgcgcatgactacgcg
gtgctcgcgggtgcgcacgatgccgaagtggacgatacgcgcgaagcggtgcggctgatc
ctgtcgctgcaaccgcgcccgggcgacgacctgctgcaggaaagcaacgccagcgtgatt
ccggatgtgctcgcctggcatgccgacggcagctggcgcgtcgcactgaatccggccacc
acccatcgcgtcagcatcaacccggtgcacgaacgcgcgctggccgacgccggcgaggca
gcacagccgttgcgcgacatgctgcaggaagcgcgctggctgacccgcgggctgtcgatg
cgctacgagaccctgctgcgtgcaacgcgcgccatcgtcgaacgccaggccgccttcctg
gcgcgtggcgaagaagcgatggcaccgctgacgctgaaagaaatcgccgacgagatcggc
atgcacgaatcgacgatctcgcgcatcaccaccggcaaatacatccagaccccgcgcggc
accttcgagctcaagcacttcttcgccgtgcggctggaaggcgccagcgtctccggccag
gccgtcaaggcgatggtgcgtcgcttgatcgaaagcgagccggccggtcggccgttggcc
gacgaggccattgccggattgctgtcgcggcaaggcgttcacattgcgcgccgcaccgtc
gccaagtaccgcgaacaacttgatatcgccccggcacgcgagcgccgccgcaccaccaaa
ccgctgcttgcccgggcaggataa
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