Xanthomonas oryzae pv. oryzicola CFBP7342: BE73_19305
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Entry
BE73_19305 CDS
T03868
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xoz
Xanthomonas oryzae pv. oryzicola CFBP7342
Pathway
xoz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xoz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BE73_19305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xoz03021
]
BE73_19305
03400 DNA repair and recombination proteins [BR:
xoz03400
]
BE73_19305
Enzymes [BR:
xoz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BE73_19305
Transcription machinery [BR:
xoz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BE73_19305
DNA repair and recombination proteins [BR:
xoz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BE73_19305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AJQ88948
LinkDB
All DBs
Position
complement(4058847..4063064)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
MVELHAKVKVRITQVDVDAVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK
NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSM
NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLKERV
LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARC
YGRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSV
KFNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYGTTITAKDGDAVKAGQSVA
NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAHAKELRPIV
RIVDGKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF
EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ
MLRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSE
METLSGKPAVAEPVAAVADAGADEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgattcgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggtcacatcgatctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggtttgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctacgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgtccggagtggatggtcatgacc
gtgcttcccgtgctgccgccggacctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgc
cgcctgctcgagctcaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgttgctggacaacggccgtcgcggccgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggcgaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaagtgatccgcgagcatccg
gtgctgttgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtaccgccttcaacgccgac
ttcgacggcgaccagatggctgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacatgagccgcgcgcttgagaacaag
aagggtgaaggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgt
atggtcgaactgcacgccaaggtcaaggtccgcatcacccaggtggacgtggacgccgtc
gatggcaagcgcaccagcggcacctcgatcgtggacaccacggtcggtcgtgcgctgctg
agcgaaatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaag
aacatctcgcgtctgatcaactccagctaccgtctgctgggcttgaaggacacggtcgtg
ttcgccgacaagctgatgtacaccggctatgcctatgcaacccgtgccggcgtgtcgatc
ggtatcgacgacatgctgatccccgacgagaagaagggcatcctcaccgaggccgaagcc
gaagtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgctac
aacaaggtcgtggacatctggtcgcggaccagcgagcgcatcgccaaggcgatgatggac
accatcggtaccgaaaaggttgagaacgccaagggcgagaccatcgaccagaagtcgatg
aactcgctgtacatcatggccgactccggtgcgcgtggtagccaggcgcagatccgtcag
ctggccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatc
aaggcgaacttccgcgaaggtctgaacgtgcaggagtacttcaactccacccacggtgcc
cgtaagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacacgtcgt
ctggtcgacgtggcgcaggacgtggtgatcaccgaaatcgattgcggcaccaccgaaggg
ttgatcatgaccccgatcgtggaaggtggcgacgtggtggagccgttgaaggagcgcgtg
ctgggccgtgttgtggccgaggacgtgtacctgccgggcaacgacgaagagccgatcgtc
acccgcaacacgctgctcgacgaagcctgggtcgccaagctcgaagacgccagcgtgcag
tcggtgaaggtgcgttcgaccatcagctgcgaatcctccttcggcgtgtgcgcacgctgc
tacggccgcgatcttgcacgtggtcaccaggtcaacatcggcgaatcggtcggcgtcatc
gccgcgcagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggt
ggtgcggcatcgcgtgcggctgcggtggacaacatcaccgtcaagaccactggttcggtg
aagttcaacaacctcaagtcggtggcgcatgccagtggctcgttggttgcggtctcgcgt
tctggcgaactgtccgtgctcgatggccatggccgcgagcgcgagcgttacaagctgccg
tacggcaccaccatcaccgccaaggacggcgatgcggtcaaggccggtcaaagcgttgcc
aactgggatccgcataaccacccgatcgtctcggaagtggccggtttcatccgtttcatc
gacttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggtctggcctcg
cgcgaaattaccgacccgaagcgtcgcggtgcgcatgccaaggaactgcgtccgatcgtg
cgtatcgtcgatggcaaggggaatgacctgacgatcccgaacacggatctgccggcgcag
tacctgctgccgccccgctccatcgtcaacctgcaggatggcgccgccgtcggcgtgggc
gacgtggtggcgaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctg
ccgcgcgttgccgatttgttcgaagcacgcaagccgaaggatccggcgatcctggccgag
cgctcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaag
gacaccgatgggtcggaacacgaagagctgatcccgaagtaccgccagatcatcgtgttc
gaaggcgagcacgtgaccaagggcgagacggtggtggacggcgagccgagcccgcaggac
atcctgcgtctgctgggtgtcgaaccgctggccgcgtacctggtcaaggaaatccaggac
gtgtaccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcactcgccag
atgctgcgcaaggtcgagatcgtcgatcagggcaacagcaaattcctcaacggcgagcag
gtcgagcgtcagcgcgtcatcgaggaaaatgcccgcctggtcaagcgcaacgaactgccg
gccaagtacgatccggtgctgctgggtatcaccaaggcgtcgcttgccaccgagtcgttc
atctcggcggcatcgttccaggagaccacccgcgtgttgaccgaggcggccgttcgcggc
acccgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgattccggcc
ggtacgggtctggcgtaccacgccggacgtcgcaaggcctcgggtttgaccgactcggaa
atggaaacgctgtcgggcaagccggcagttgccgaaccggtcgcagctgtggccgacgct
ggcgcggacgaggagtaa
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