Xanthomonas perforans: BJD13_02545
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Entry
BJD13_02545 CDS
T04778
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xpe
Xanthomonas perforans
Pathway
xpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD13_02545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xpe03019
]
BJD13_02545
03009 Ribosome biogenesis [BR:
xpe03009
]
BJD13_02545
Enzymes [BR:
xpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJD13_02545
Messenger RNA biogenesis [BR:
xpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJD13_02545
Ribosome biogenesis [BR:
xpe03009
]
Prokaryotic type
rRNA helicases
BJD13_02545
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
adh_short
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
APO98077
UniProt:
A0A0G8WHC6
LinkDB
All DBs
Position
196877..198775
Genome browser
AA seq
632 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLHQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMSRITETLAGGQIDMYRDLLQRYEAENNVP
AIDIAAALAKLLQGDAPFLLTPPVRGAREDTAPRERHERADRGDRPRFEPKFERGPRADG
ERAARPPRGDDAGERPRREPAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGLES
RYIGRIDIQDDYSILDLPADMPRELLQHLKKVWVSGQQLNMRKLEDGEAAAAASKPRFPR
GGKPSGRPNGPGRPMDRAGAPHRKGPPKPRGE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagatctcggcctctcggacgctgtg
atgaaggccgttgccaatgtcggctacgagtcgccgtcgccgatccaggctgccaccatc
cccgcgttgctggccggccgcgatgtgctcggccaggcccagaccggtaccggcaagacc
gccgcattcgcgctgccggtgctgtccaacgccgatctccaccaggtcaagccgcaggca
ttggtgctggccccgacccgcgaactggccatccaggtcgccgaggcgttccagaaatat
gccgaagccattcccggcttccgcgtgctgccggtctacggcggccagccgtatgcccag
cagctgagcgcgctcaagcgcggcgtgcatgtggtggtcggtaccccgggccgggtgatc
gatcacctggaccgcggtaccctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagttg
ccggagcagcgccaggtggccttgttctcggccaccatgccgccggccatccgccgtatc
gcgcagacctatctgaaggacccggccgaagtcaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtgagcgggctgcacaagctggacgcgttgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggcggcc
accgaagagctggcgcagaagctgcaggcgcgcggcatggcggcagcggccatcaacggc
gacatgcagcaggccgcacgcgagaagaccatcgcccagctcaaggacggcaagctggac
atcctggtggccaccgacgtggccgctcgcggtctggacgtggagcgcatcagccacgtg
ctgaactacgacattccctacgacaccgaaagctacgtgcaccgcatcggtcgcactggc
cgtgccgggcgtaacggcgacgcgatcctgttcgtgacgccgcgcgagaagggcatgctg
cgctccatcgaacgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggac
gcggtcaacgacacccgcgtcgcgcgtttcatgagccgcatcaccgagaccctggcaggt
ggccagatcgacatgtaccgcgacctgctgcagcgctacgaggccgaaaacaacgtgccg
gcgatcgatatcgccgccgcgctggccaagctgctgcagggcgatgccccgttcctgctg
accccgccggtgcgcggtgcgcgcgaggacactgcgccgcgcgaacgtcatgagcgtgcc
gaccgcggcgatcgcccccgcttcgagccgaagttcgaacgtggcccgcgtgccgacggc
gagcgcgctgcacgcccgccgcgcggtgacgatgccggcgagcgtccacgccgcgagccg
gccccacgtggcgagccggagttcggcatggagagctaccgcatcgaagtgggccacagc
cacggcgtgaagccggccaatatcgtcggcgcgatcgccaacgaagccgggctggaaagc
cgctatatcggtcgtatcgacatccaggacgattactcgattctggatctgccggccgac
atgccgcgcgaactgctgcagcacctcaagaaggtctgggtgtctggccagcagctcaac
atgcgcaagctggaagacggcgaagcggccgcagcggcgtccaagccgcgcttcccgcgt
ggcggcaagccgtccggtcgcccgaacggcccgggccgtccgatggaccgcgccggcgcg
ccgcaccgcaagggtccgccgaagccgcgcggcgagtaa
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