Xanthomonas perforans: BJD13_03235
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Entry
BJD13_03235 CDS
T04778
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xpe
Xanthomonas perforans
Pathway
xpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD13_03235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xpe03019
]
BJD13_03235
03016 Transfer RNA biogenesis [BR:
xpe03016
]
BJD13_03235
Enzymes [BR:
xpe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BJD13_03235
Messenger RNA biogenesis [BR:
xpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BJD13_03235
Transfer RNA biogenesis [BR:
xpe03016
]
Prokaryotic type
tRNA degradation factors
BJD13_03235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
DUF7680
Phage_tube
KH_5
Motif
Other DBs
NCBI-ProteinID:
APO98200
UniProt:
A0AAP2R2S7
LinkDB
All DBs
Position
354262..356376
Genome browser
AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAG
TANAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNEG
MIAALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGE
LEYQTMRGSVLSSKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVQASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcactcttgagacgggc
gaaatcgctcgccaggcaggcggcgccgtgatcgtcaagttcgacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaagggcaggacttctttcctctgacggtc
gattatcaggagaagttctacgctggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgcgcgaccgagaaggaaacgttgatctcgcgcctgatcgatcgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtgcagatcatcgccaccgtgatgtcgatgaac
ccggacatcgacggcgacatcgccgcgctgatcggcgcctcggctgcactgtcgctggcc
ggcacccccttcaagggcccgatcggcgctgccaaggtcggctacaagaacggtgaatac
atcctcaacccgaccgtgaccgagctgaaggattcgcagctggagctggtcgtggccggt
accgccaacgcggtgctgatggtcgagtccgaagccgagctgctgtccgaagaagtgatg
ctgggcgcagtgacgttcggtcatcgcgagatgcagaaggtcatcaacgtcatcaacgag
ctgaccgtcgaagccggcaccaagccgtccgactgggtggctccggcaaagaacgagggc
atgatcgccgcactgaaggaagctgtgggcgatcagctcgcgtcggcattccaggtgcgc
gacaaactgcagcgccgcgatgcgatttcggcgatcaagaaggacgtgctgggcgcactg
gcgccgcgcgccaccatcgaaggctgggctgccggcgatctggccaaggaattcggcgag
ctggaataccagaccatgcgtggttcggtgttgagcagcaaggtgcgtatcgacggccgt
gcactggacaccgtgcgtccgatcagcgccaaggccggcgtgttgccgcgtacccatggc
tcggcgctgtttacccgcggcgagacgcaggcgatcgtgatcaccaccctgggcaccgcg
cgcgacggtcaggtcatcgacgcagtgtcgggcgagtacaaggaaaacttcctgttccat
tacaacttccctccgtactcggtgggcgagtgcggtcgtttcggtgcgccgaagcgtcgt
gaaatcggccacggccgcctggccaagcgtggcgtgctggctgtgatgccgaccctggaa
gaattcccgtacaccattcgcgtggtctcggaaatcaccgagtccaacggttcgtcctcg
atggcatcggtctgcggcagctcgctggcgctgatggatgccggcgtgccgatcaaggcg
ccggtcgcgggtatcgcaatgggtctggtcaaggaaggcaacgacttcgtcgtgctctcc
gacatcctgggtgacgaagatcacctcggggacatggacttcaaggtggccggtactgcc
gaaggcgtgtccgcgctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggccttgcagcaggccaaggctggccgcctgcacatcctgggcgagatggcgcat
gcgctgaccaccccgcgtcaggaattgagcgactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggccatc
accaaggaaaccggtacgcagatcgacatccaggacgatggcacgatcatcatcgcctcg
gtcaatgccattgccgcgcaggctgcgaagtcgcgcatcgagcagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaagtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggcctggtgcacgtgtcgcagatttccagcgagcgcgtg
gagaaggtcggcgacaagttgaaggaaggcgatctggtccgcgtcaaggtgctggaagtg
gacaagcagggccgcatccgtctgtcgatcaaggcagtggaagaaggcgaaggcgtgcag
gcgtcggccgagtaa
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integrated database retrieval system
