Xanthomonas perforans: BJD13_05515
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Entry
BJD13_05515 CDS
T04778
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xpe
Xanthomonas perforans
Pathway
xpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD13_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xpe03019
]
BJD13_05515
03009 Ribosome biogenesis [BR:
xpe03009
]
BJD13_05515
Enzymes [BR:
xpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BJD13_05515
Messenger RNA biogenesis [BR:
xpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJD13_05515
Ribosome biogenesis [BR:
xpe03009
]
Prokaryotic type
rRNA processing factors
BJD13_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
APO98595
UniProt:
A0AAP2W3F2
LinkDB
All DBs
Position
complement(874418..878086)
Genome browser
AA seq
1222 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFM
KQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVN
SSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIR
VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEV
TRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREEAPA
PVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNRGER
GERGGQRRDGRDARNGGNGGNQQRGNGGNGNGANKERRDERRQPASAQGAQNGAQAQQVQ
APKPPRNETQASKQQQPQQQKSKPQNQSPRPPRAPAQQDGAPAERQPRPARQDEGTAAAQ
TVTSTAATATTSSVVAAIADAAAPTNAQTNANEAAQAHPVDVMVSESTADRGADANATAP
AQDAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGTSVDGLEGDDLDSDADNDLDG
DSEGDDAGAHAHVSGAPRAGQPEFDFDDEAPAPAVRAKSESAAQATAKPRPVPKERAEPQ
GGSDTASTTAPISNTVPASQPSAAPVAEAARERPAAPVAATDAPAKPAPAVTASTAASTE
GAAAQAAEQRPAPVAQQASATPAPLAAPAPVASTPAPAVAPAAGTAPTAAVAAAAASAPA
IASPVTNDAATSSQHQPAPSAPASAAVPAADAEAAKADHQQRAVSADVAAPSVQAAPVQP
ARATPADDLPAPAAATPASQAAVVTVTSPHAEQSASQAPSAEVAMTSTSTVVQASPSADT
APARKPYAPVQTTMLDALSPNDAAPAASSASKPPADPAAEQELQAGKPKPTVVVSEPVKP
AAPSTDADQVQDDDSNKPRGDR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggacggccagacc
ctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaacatctacaag
ggccgtatcacccggctagagccttccctggaagcggcgttcgtggactatggcgccgag
cgtcatggcttcctgccgctgaaggaaatttcccgcgattatttccaggccggcgtcgac
cataacaagtcgaccattcgtgagctgctgcgcgaaggccaggaaatcgtcgtgcaggtg
gacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcgctggccggc
cgctacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgccgcatcgag
ggcgaagaccgtgccgcgttgaaggaagcgctggacaagctcgacattcctgacgacatg
ggcgtgatcatccgcactgccggcgtgggccgcgatgccgaagaactgcagtgggatctg
gactacctgctgcagacctggaaggcgattgccgaagctgcgctgagcaagccggccgcg
ttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactacctgcgcgcc
gatatcggcgagatcctggtcgatacgccggagctctacgccgacgcccaggaattcatg
aagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgatatcccgctg
ttcaatcgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaacgtgcgcctg
ccctcgggcggctcgatcgtggtggaccagaccgaagcgctgaccgccgtcgacgtgaac
tcctcgcgcgctaccaagggcagcgatatcgaagaaaccgcgttccagaccaatctggaa
gcggccgaagaagtcgcacgccagctgcgcctgcgtgacctgggtggcctggtggtcatc
gacttcatcgacatggcctcgtccaagcaccagcgcgaagttgaaaacaggctgcagaac
gcactcaagtacgaccgcgcacgcgtgcagctgggccgtatctcgcgtttcggcctgatg
gaaatgagccgccagcggctgcgaccgagcctgggcgaatccagccagatcgtctgtccg
cgttgcgatggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcaatcatccgc
gtggcagaagagcacgccatgaaggaaaacaccgggcaggtgctggtccaggcgccggtg
gaaatcgccaactacctgctcaacgaaaagcgcagcgcactgcgtgaaatcgagcagcgc
cacgagtcgccgatcatcatcgtcgccgacgagcaactgcacaccccgcactacgaagtc
acgcgcctgcgcgagaacgagctgggcgaagagagcggcaagccgagctaccagcgcggc
accccgcgcaagctgccggtgcatgcactgaccaaggcgcagttgaatattcccgcagcc
ccggcggtcacgtcgatcaagccgagccaaccggcaccggttcgcgaagaagcccctgcc
ccggtcgcgcccgtcgctgcgccggcgccggtggtgaccgtgcccattccggcaccggtc
accggtgttgtgggctggctgaagcggatcttcggcggcgtcgagcccgtcgccccggcc
ccggagtcgaccccgcgtccgcgccagaacgatgccggccgcaataaccgtggcgaacgc
ggcgagcgtggcggtcagcgccgcgatggtcgcgatgcccgtaatggcggcaatggtggc
aaccagcaacgtggcaatggcggcaatggcaacggcgccaataaggaacgccgtgacgag
cgtcgccagcctgccagcgcccagggcgcgcagaatggcgcacaggcacagcaggtgcag
gcgcctaagccgccgcgcaatgaaacgcaggcgtcaaagcagcagcaaccgcagcagcag
aagtccaagccgcagaaccagagcccacgcccgccacgtgcgcctgcacagcaggacggc
gcgccagccgagcggcagccgcgtccggcacgccaggatgagggtacggcagcggcgcag
accgtgacctccactgccgcaacggccaccacgtcgagcgtggtggccgccattgctgac
gccgctgcacccaccaatgcgcagaccaacgccaatgaagcggcgcaggcgcatcctgtc
gatgtcatggtgagcgaatccactgctgatcgtggcgccgacgcaaatgcaactgcaccg
gcccaggatgccgcaggcgacgatgcagccaatggcgaaggcgggagccgtcgccgccgc
ggccgtcgtggtggccgtcgtcgtcgtcgtggcgccggtgccaacggagaaggtggtacc
agcgtcgatggcctggaaggcgacgatctggacagcgatgccgacaacgatctcgatggc
gacagcgaaggcgacgacgccggtgctcatgcgcatgtatcgggcgcaccgcgcgccggc
cagccggagttcgatttcgacgatgaggcaccggcaccggcggtgcgcgccaagtcggaa
tccgctgcccaggcaaccgccaagccgcgtccggttcccaaggagcgcgcagagccacag
ggcggcagtgatacagcttcgaccaccgcgccgatttccaataccgtgccggcatcgcag
ccttcggcagcacccgttgccgaagccgcccgcgagcgccctgctgcgcccgtcgctgct
accgacgcaccagccaaacccgcgccggctgtcacagcgtcgacggctgccagcaccgag
ggtgctgcagcgcaggctgcagaacagcgccccgcgccggtcgcacagcaggcgtccgct
accccggctccgcttgccgcccctgcgccagtggcatccacgccggcacctgcagtggct
cccgctgccgggactgcaccgacggcagcggtggcggctgccgcggcttcggcaccggct
attgcatcgcctgtgaccaacgatgcggcgacaagcagccagcaccaacctgcgccctcg
gcgccggcaagtgcggctgtacctgccgccgacgccgaggccgcgaaggccgaccaccag
cagcgcgctgtgtcggcggacgtggcagcgccttcggtacaggcagcgccggtgcagccg
gcacgggcaacgcctgctgacgacctaccggcacctgcggcggctacgccggcatcgcag
gccgcagtagtcacggtgacgtcgccgcacgccgagcagtctgcttcgcaggcgccatcg
gccgaggtggcaatgacctcgacctcgacggttgtgcaggcaagcccaagtgcggacacc
gcgcccgcacgcaagccgtatgctccggtgcagaccaccatgctcgatgcgctgagcccg
aacgatgctgcgccagcagcctcctcggccagcaagcctccggcagaccctgcagcagag
caggagttgcaggcaggcaagcccaaaccgacggtggtcgtgtccgaaccagtcaagccg
gctgctccatcgaccgacgccgaccaggtgcaggatgacgacagcaacaagccgcgtggc
gatcgctga
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