Xanthomonas perforans: BJD13_11960
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Entry
BJD13_11960 CDS
T04778
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xpe
Xanthomonas perforans
Pathway
xpe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xpe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BJD13_11960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xpe03021
]
BJD13_11960
03400 DNA repair and recombination proteins [BR:
xpe03400
]
BJD13_11960
Enzymes [BR:
xpe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BJD13_11960
Transcription machinery [BR:
xpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BJD13_11960
DNA repair and recombination proteins [BR:
xpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BJD13_11960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
APO99711
UniProt:
A0AAP2R832
LinkDB
All DBs
Position
complement(2308140..2312354)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVEAGGKRSSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKKN
ISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLRERVL
GRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQSVAN
WDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAQAKELRPIVR
IVDAKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSEM
ETLSGKPAAAEPVAAVADAGADEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgatccgttcttggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccgtaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgtcgcgag
cgcatgggtcacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggcggtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaagaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgtccggagtggatggtcatgacc
gtgcttcccgtgctgccgccggacctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgt
cgcctgctcgagctcaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggccgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcaccgtcggtccgtac
ctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtgattcgcgagcatccg
gtgctgttgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgaaccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtactgccttcaacgccgac
ttcgacggcgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgttgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacatgagccgcgccctggagaacaag
aagggcgagggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgc
gtggtcgaactgcacgccaaggtcaaggtgcgcatcacccaggtggatgtggaagccggc
ggcaagcgcagcagcggtacctcgatcgtggacaccacggtcggccgtgcgctgctgagc
gaaatcctgcctgaaggcctaccgttccagctggccaacaccgagatgaccaagaagaac
atctcgcgtctgatcaactccagctaccgtctgctgggcttgaaggacaccgtcgtgttc
gccgacaagctgatgtacaccggctatgcctacgcaacccgcgccggcgtgtcgatcggt
atcgacgacatgctgatccccgacgagaagaagggcatcctcaccgaagccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggcctggtcaccgccggcgagcgctacaac
aaggtcgtggacatctggtcgcgtaccagcgagcgcatcgccaaggcgatgatggacacc
atcggtaccgaaaaggtcgagaacgccaagggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcccgtggtagccaggcgcagatccgtcagctg
gccggcatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggtctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagacggcgaactccggttacctcacccgccgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaaatcgattgcggcaccaccgaagggttg
atcatgaccccgatcgtggaaggcggcgacgtggtcgagccgttgcgcgagcgcgtgctg
ggccgcgtggtggccgaggacgtgtacctgccgggcaacgacgaagagccgatcgtcacc
cgcaacacgctgctcgacgaagcctgggtggccaagctcgaagacgccagcgtgcagtcg
gtgaaggtgcgttcgaccatcagctgcgaatcctcgttcggcgtgtgcgcacgttgctac
ggccgcgacctcgcacgtggtcaccaggtcaacatcggcgaagcggtcggcgtcatcgcc
gcgcagtcgatcggcgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcatcgcgtgcggctgcggtggacaatatcaccgtcaagaccaccggttcggtgaag
ttcaacaacctcaagtcggtggcgcatgccagcggttcgctggttgcggtctcgcgttct
ggcgaactgtccgtgctcgacggccatggccgcgagcgcgagcgttacaagctgccgtac
ggcgcgaccatcaccgccaaagacggcgatgcggtcaaggccgggcagagcgttgccaac
tgggatccgcataaccacccgatcgtgtcggaagtggctggcttcatccgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgagctgaccggtctggcgtcgcgt
gaaatcaccgacccgaagcgtcgcggtgcacaggccaaggaactgcgcccgatcgtgcgc
atcgtcgatgccaagggcaacgacctgacgattccgaatacggatctgccggcccagtac
ctgctgccgccgcgctccatcgtcaacctgcaggacggcgctgccgtcggcgtgggcgac
gtggtggccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgttgccgacttgttcgaagcacgcaagccgaaggatccggcgatcctggccgaacgc
tcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttcggaacacgaagagctgattcccaagtaccgccagatcatcgtgttcgaa
ggtgaacacgtgaccaagggcgagaccgtggtggacggcgagccgagtccgcaagacatc
ctgcgcctgttgggtgtcgaaccgctggccgcatacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacgcgccagatg
ctgcgtaaggtcgagatcgttgaccagggcaacagcaagttcctcaacggcgagcaggtc
gagcgccagcgcgtcatcgaggaaaatgcccgcctagtcaagcgcaacgaactgccggcc
aagtacgatccggtgttgctgggtatcaccaaggcgtcgctggccaccgagtcgttcatc
tcggcggcatcgttccaggaaaccacccgcgtgttgaccgaggcggccgtccgcggcacc
cgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgatcccggccggt
acgggtctggcgtatcacgccggacgtcgcaaggcctcgggtctgaccgactcggaaatg
gaaacgctgtcgggcaagccggcagccgccgaaccggtcgctgcagtggccgacgctggc
gcggacgaggagtaa
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integrated database retrieval system
