Xanthomonas perforans: BJD13_19995
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Entry
BJD13_19995 CDS
T04778
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
xpe
Xanthomonas perforans
Pathway
xpe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xpe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BJD13_19995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xpe03021
]
BJD13_19995
Transcription machinery [BR:
xpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BJD13_19995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
APP01071
UniProt:
A0AAQ1BV32
LinkDB
All DBs
Position
4081462..4083339
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AA seq
625 aa
AA seq
DB search
MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHE
VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEA
DAAAAALAAAGPVAVSDDEAVDEDDDEDGDDEAAEEEAGPTGPDPVEVATRMENLANEYA
KFKKAYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLH
LATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIISEQQGSIEMEK
ANYLTLGEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
MLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVE
SPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSEQLRSFLDID
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccagcaatccgacatcaagctactgatcagcaagggcctg
gaacagggctatctgacctacgccgaagtcaatgaccatctgcccgacgacctcgtcgac
ccggagcagatcgaagacatcatcagcatgatcaacggcatgggcatcgatgtccatgaa
gttgcacccgatgccgaaaccctgttgctcaacgatggcaacaccggcaaccgcgaggtt
gacgacaccgccgccgaagaagctgccgccgcgctgaccgcgctggacaccgaaggtggc
cgcaccaccgacccggtgcgcatgtacatgcgcgagatgggcacggtcgagctgctgacc
cgcgaaggcgaaatcgccatcgccaagcgcatcgaggaaggcctcagccaggtccaggcc
gcattgggcgtgttcccgctgtcgaccgaaatgctgctggccgattacgaagcgcacaag
gaaggcaagaagcgtctggccgagatcgtggttggcttcaacgacctgatcgaagaagcc
gatgcagccgctgctgcgctcgccgcggccggcccggtcgccgtgtccgacgatgaagcg
gtcgacgaagacgacgacgaagacggcgatgacgaggccgccgaagaagaggccggcccg
accggtccggatccggtggaagtggccacgcgcatggagaacctggccaacgaatacgcc
aagttcaagaaggcctatgccaagaacggcgccgagcacaagctggtggtcaaggcccgc
gaagacatggccgccatcttcaccacgctcaagctgccgctgccgctgaccgacgcgctg
gtcacccagctgcgtggtgtggtcaatggcatcaaggatcacgagcgcaaggtgctgcac
ctggccaccaccgtggcacgcatgccgcgcaaggacttcatccgctcctgggaaggcaac
cagaccaacctggaatgggtggaagacgcactcaagcgcaagcagaagtggtcgtcggcg
ctgcgcgacgtcaaggaccagatcatctccgagcagcagggctcgatcgagatggaaaag
gccaactacctgaccctgggcgagatcaaggaaatcagccgtgcgatggcttatggcgaa
gccaaggcgcgcaaggccaagaaggaaatggtcgaggccaacctgcgtctggtgatctcc
atcgccaagaagtacaccaaccgcggcctgcagttcctggacctgatccaggaaggcaac
atcggcctgatgaaggccgtggacaagttcgaataccgtcgcggttacaagttctcgacc
tatgccacgtggtggatccgtcaggccatcacccgttcgatcgccgatcaggcgcgcacc
atccgtatcccggtgcacatgatcgaaacgatcaacaagttgaaccgcatttcccgtcag
atgctccagcagttcggccgcgaggccacgccggaggaactggccaaggaaatggacatg
cccgaggacaagatccgcaaggtgatgaaaatcgccaaagagccgatctcgatggaaacc
ccgatcggcgacgacgaggattcgcatctgggcgacttcatcgaggacaccaatgtggag
tccccgatcgacaacaccaccaacatcaatctctccgagacggtgcgtgacgtgttggcc
ggcctcaccccgcgcgaggcgaaggtgctgcgcatgcgcttcggtatcgacatgaacacc
gatcacacgctggaagaggtcggtaagcagttcgacgtcacccgtgagcggattcgtcag
atagaggccaaggcgttgcgcaagctgcgtcacccgagccgttcggaacagctgcgctcg
tttctggatatcgactga
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