Xanthomonas perforans: BJD13_21085
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Entry
BJD13_21085 CDS
T04778
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xpe
Xanthomonas perforans
Pathway
xpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD13_21085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xpe03019
]
BJD13_21085
Enzymes [BR:
xpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJD13_21085
Messenger RNA biogenesis [BR:
xpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJD13_21085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
APP01268
UniProt:
A0A0G9BYG1
LinkDB
All DBs
Position
complement(4283988..4285376)
Genome browser
AA seq
462 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGERAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSGGPRQANAGAGAGRRDGGRGGNGRPANRGA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tacgaaacccccaccccgatccagcagcaggcgatcccgttggtgctggccggtcacgac
ctgctggccggcgcgcagaccggcaccggcaagaccgctgccttcggcctgccgctgctg
cagcacctgggcaccgcgccgcagaccgtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgaactggccacccaggtgcacgacagcctgcgcggctacagcaag
tacttgcgtatccccagcgcggtgatctatggcggcgtcggcatgggcaaccagctcgat
gcgctgcgtcgtggcgtggacctgctgatcgcctgcccgggccgcctgatcgaccatatc
gaacgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgatcgc
atgctcgacatgggcttcctgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcagacgctgctgttctcggccaccttcgaagagaacatcaaacagttggcgctg
gagttcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgatggcgcccgcaagcgcgatctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtgttcgcgcgcaccaagcacggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcggcgatccatggcaacaag
agccagggtcagcgcatgcgcgcgctgagcgacttcaaggcaggccgggtgaccgtgctg
gtggccaccgatatcgccgcgcgcgggatcgatatcgaccagctgccgaaggtcatcaac
tacgacctgccgatggtggccgaggactacgtgcaccgcatcggccgcaccggccgtaac
ggctccaccggcgaggcgatttcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgttggggcaacagcgcgccgggtcgcgccgagcagccgggtggcgagcgc
gcgccgcgcaagagccacgcccgtcgtccacatggcgatgcaccgcgtcaggcgcatgcg
catgccggcccgaagaagccgggtggccagcgcagcggcgggccgcgtcaggccaacgct
ggcgcgggcgcaggccgtcgcgatggtggacgtggcggcaatggccgtccggccaaccgc
ggcgcctga
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