Xanthomonas perforans: BJD13_23275
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Entry
BJD13_23275 CDS
T04778
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xpe
Xanthomonas perforans
Brite
KEGG Orthology (KO) [BR:
xpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xpe03019
]
BJD13_23275
Enzymes [BR:
xpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BJD13_23275
Messenger RNA biogenesis [BR:
xpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BJD13_23275
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_30
nSTAND3
NACHT
ResIII
SRP54
Cas3-like_C_2
T2SSE
AAA_23
AAA_25
TsaE
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
APP01652
UniProt:
A0AAP2KCQ8
LinkDB
All DBs
Position
4824070..4828191
Genome browser
AA seq
1373 aa
AA seq
DB search
MSAIDSTLADTLRERRRAVDGAMSRDRGRLLGLWSRWQGKPGNPQVRDAFEQALAASQAQ
RQARAEQQPAITLDDQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILLA
EIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRSDLKLIVTSATIDTERFARH
FDDAPVISVEGRTFPVEVRYRPLEGDTGDSDDGEHGSGRDGERSVNDAIVAAIDEITRID
PRGDVLMFLPGEREIRDAHQSLERRKYRETEVVPLYARLSAADQDRVFNPGPRRRLVLAT
NVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGIC
YRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQ
LLELGAIDVQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAFLGIQDPRER
PPEAREAADNAHALFADARSEFVGILRLWDAYRQVHEDLTQSKLRDWCNRHFLGFLRMRE
WRELHRQLRLLCEELGWSEEPANVMLAPLLAGASAPAREDGHNVNRPTRGQLHRAARLAR
EGKPDPNAAPAQPAPAATNKQAEAAETSARTTERERAAAYQALHRALLAGLPTQIGHRTE
KGDYLAARQRRFVPFPGSALARKPPPWILAATLLDTQKVWGMTNAAIEPDWAIAELPHLL
ARKHFDAHWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPAAAHDLFVRQGLVTGEIN
TRAAFVADNLKVLEQAREEEAKLRRAGIVADEGWQARWYLDRIPAELHSASGLDAWWKSL
PPDKRRSLHWSLNDLLPGEGSEADRFPKYFPIGDARLPLHYRFEPGAIDDGVTLEVPLHL
LNALDPARLSWLAPGFVADKASALIRSLPKAQRRNYVPAPDFGRAFYEAFSIASADDIRG
ELARFLTKATGTQVTALDFDEQALDTHLLMNLRLRDDDGRVLAESRDLDGLRARFGERAG
QAFAARAGRALAAEGLRDFPSAPIPEQVAGEAGVPAYPALVDQGDNAALRIFADRNDAAR
AHPRGVRRLLEIALADKIKQVRKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLADG
LGAIRDPGAFAQRRDDAGKRLFGEAMERLKLAESILGAVAELKPLLEAPLMGWARGNLDD
MEQQLRALVHAGFLRDTPADALANYPRYLRAMILRTERAKRDPARDQARMLELKPFVDAV
EAAAAHGLQDRQEWQALRWDLEELRVSVFAQELGAKSGVSAKKLSQRVAALRS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgactccacccttgccgacaccttgcgtgagcgccgccgtgccgtggat
ggtgcgatgagccgcgaccgtggccgcttgctgggcctatggtcgcgctggcagggcaag
ccgggcaacccgcaggtgcgcgatgcgttcgagcaggcgctggcggcatcgcaggcgcaa
cgccaggcgcgggccgagcagcagccggccatcacgctggacgaccagttgccgatcgca
cgcgaggccgagcgcatcatcgcgctgatccgcgaccatcaggtggtggtcatcgccggc
gaaaccggctcgggcaagaccacccagctgcccaagctgtgcctggcggccggacgcgga
gccgccgggatgatcggctgcacccaaccacgccggatcgccgcgcgtgcagtggccgcg
cgcgtggccgacgagctgaagacgccattgggcacgacggtgggcttccaggtgcgcttc
accgatcgcgtcagcgatcagtcgcgcatcaagttcatgaccgacggcatcctgctggcg
gaaatcgccagcgatcgttggctgtcgtcctacgacaccatcatcgtggacgaggcgcac
gagcgcagcctcaacatcgatttcctgctcggctatctcaagcagttgctgcgcaagcgc
tccgacctcaagttgatcgtcacctcggccaccatcgataccgagcgctttgcacggcac
ttcgacgatgcgccggtgatcagcgtggaaggccgcacctttccggtcgaggtgcgttat
cgcccgctggaaggcgatacgggcgacagcgacgatggcgaacacggcagcggccgcgac
ggcgagcgcagtgtcaacgatgcgatcgtggcggccatcgacgaaatcacccgcatcgac
ccgcgcggcgatgtgctgatgttcctgccgggcgagcgcgagattcgcgatgcgcaccag
tcgctggaacggcgcaaataccgcgaaaccgaagtggtgccgctgtacgcgcggctgtcg
gcggccgatcaggaccgtgtgttcaacccgggcccgcgccggcgcctggtactggccacc
aacgtggccgagacctcgctgacggtgccgcgcatccgctatgtggtggatccggggctt
gcccgcgtcaagcgctacagcccgcgccagaagctggaccggctgcatatcgagccgatc
tcgcaggccagcgccaaccagcgcatgggccgttgcgggcgcattgcagagggtatctgc
taccggctgtatgccgaagcggactttgccgcgcgtccggcgttcaccgatccggaaatc
cgacgttcctcgttgtccggggtgatcttgcgcatgctgcagttggggctgggcaggatc
gaagacttcccgttcctggaggcacccgacgaacgcgcggtggccgatggctggcaacag
ctgctggagctgggcgccatcgatgtgcagcggcgtctgaccgccaccgggcgccagatg
gcgcgcctgccagtggacgtcaagctggcgcgcatgctggtggccgcgcagcaacatggg
tgcctgcgcgagatgatcatcatcgccgcattcctgggcatccaggatccgcgcgagcgc
ccgccggaagcgcgcgaggccgccgataacgcgcatgcgctgtttgccgacgcgcgctct
gaattcgtcggcatcctgcgcttatgggatgcgtaccggcaggtgcatgaagatctcacc
caatccaagctgcgcgactggtgcaaccggcatttcctcggtttcctgcgcatgcgcgag
tggcgcgagctgcaccggcagctgcggttgctgtgcgaagaactgggttggagcgaagag
ccggccaatgtgatgctggcgccgttgctggccggtgccagcgcgcccgcccgcgaggac
ggccacaacgtcaaccggcccacgcgtggccaactgcaccgtgctgcgcggctggcgcgc
gaaggcaagccggatccgaatgcagcacctgcgcaacctgcacctgcagcgacgaacaag
caggccgaggctgccgaaacctcggcgcgaaccaccgagcgcgagcgtgcggcggcgtat
caggcgctgcatcgcgcgctgctggcgggcctgccgacgcagatcggtcatcgcaccgaa
aaaggcgattatctggccgcgcggcaacgccgcttcgtgccgtttccgggttccgcattg
gcgcgcaaaccgccgccgtggattctggcggccacgctgctggacacgcagaaagtgtgg
ggcatgaccaatgccgcgatcgagccggattgggcgattgccgagctgccgcatctgctg
gcgcgcaagcatttcgatgcgcactggtcgcgtgcgcaggggcaggtggtcgcttcggaa
cagatcagcctgttcgggctggtgctggcgccgaaaaagcccgtgcatttcggcaagatc
gatccggccgcagcgcatgacctgttcgtgcgccaaggcctggtgacgggcgaaatcaat
acgcgggccgcattcgtggccgacaatctcaaggtgctcgagcaggcgcgcgaagaagag
gccaagctgcgtcgtgccggtatcgttgccgacgaaggctggcaggcgcgctggtatctg
gatcgcattccggccgagctgcattcggccagcggtctggatgcgtggtggaagagcttg
ccgccggacaagcgccgcagcctgcattggtcgttgaacgatctgctgccgggcgaaggc
agcgaagccgatcgctttccgaaatatttcccaatcggcgatgcgcgcttgccgttgcat
taccgcttcgagccgggggccatcgacgacggcgtgacgctggaggtgccgttgcacctg
ctcaatgcgctggatccggcgcgcctgtcgtggctggcgccgggcttcgtcgccgacaag
gcgtctgcgttgattcgtagcctgcccaaggcgcaacgccgcaactatgtgccggcaccg
gatttcggacgtgcgttttacgaggcatttagcattgcctcggccgacgatatccgcggc
gaactggcgcgctttctgaccaaggccaccgggacgcaggtgacggcactggatttcgat
gagcaggcgctggacacgcatttgctgatgaacctgcgcctgcgcgatgacgacggcagg
gtgctggccgagtcgcgcgatctggacgggctgcgtgcgcgcttcggcgagcgcgcgggg
caggcattcgccgcacgggccgggcgcgcgctggccgccgagggcctgcgcgactttccg
agtgcgccgattcccgaacaggtggccggcgaggccggcgtgccggcatacccggcgctg
gtggatcagggcgacaatgcggcgctgcgtatctttgcagaccgcaacgacgctgcgcgg
gcgcatccgcgcggcgtgcggcgcttgctggaaatcgcattggccgacaagatcaagcag
gtgcgcaagcaactgccggtgtcgcccaagaccggtctgctgtatgcggcgatcgaatcg
caggaacgcctgcgtggcgatctggtcgatgcggcgctcaatgccgtgctggccgatggc
ctgggcgccattcgcgaccccggcgcgtttgcgcagcgccgcgacgatgcgggcaagcgg
ctgttcggcgaagcgatggagcgtttgaagttggccgaaagcatcctgggcgccgtggcc
gaactcaagccactgctggaggcgccgttgatgggctgggcacgcggcaacctggacgac
atggagcagcaactgcgcgcgctggtgcatgcaggcttcctgcgcgacacgccggccgat
gcattggccaattatccgcgctacctcagggcgatgatcctgcgtaccgagcgcgcaaag
cgcgatcctgcgcgcgaccaggcgcgcatgctcgagctcaaaccgttcgtggatgcagtc
gaagccgccgctgcgcacggtttgcaagaccgccaagagtggcaggcgctgcgttgggat
ctggaagaactgcgcgtgtcggtctttgcgcaggagctgggtgccaaatccggcgtttcg
gcgaagaaactgtcgcaacgggtcgctgcactgcgcagttga
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integrated database retrieval system
