Xanthomonas phaseoli: XppCFBP6546_06685
Help
Entry
XppCFBP6546_06685 CDS
T05156
Symbol
rpoC, XppCFBP6546P_06685
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xph
Xanthomonas phaseoli
Pathway
xph03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xph00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XppCFBP6546_06685 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xph03021
]
XppCFBP6546_06685 (rpoC)
03400 DNA repair and recombination proteins [BR:
xph03400
]
XppCFBP6546_06685 (rpoC)
Enzymes [BR:
xph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XppCFBP6546_06685 (rpoC)
Transcription machinery [BR:
xph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XppCFBP6546_06685 (rpoC)
DNA repair and recombination proteins [BR:
xph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XppCFBP6546_06685 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ATS29550
LinkDB
All DBs
Position
1160962..1165176
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVEAGGKRSSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKKN
ISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLRERVL
GRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQSVAN
WDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAQAKELRPIVR
IVDAKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSEM
ETLSGKPAVAEPVAAVADAGADEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgatgcgatc
aagatcgcgctggcgtcgccggacctgatccgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccgtaccttcaagcccgagcgggacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggtaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggtcatatcgacctggcctcgccggttgcgcacatctggttcctcaagtcgctg
ccgtcgcgcattggcttgatgctggacatgactctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtatctgaccgcgcgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggccgtgtatgagctgctgcgcacgatcgacctgcaatcggaaatgacccgt
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgtttgaccaagcgc
atcaagctgatcgaagccttcctggaatcgggtaaccgtccggagtggatggtcatgacc
gtgctgccggtgctgccgccggatctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgtaacaaccgtctgcgt
cgcctgctggagctcaatgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggtcgtgccatcaccggcactaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactattccggccgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggccaccacgatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaagtgattcgcgagcatccg
gtgctgttgaaccgcgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtctgtacggccttcaacgccgac
ttcgacggcgaccagatggctgtccacgttccgctctcgctggaagcccagctggaagcg
cgtgcgttgatgatgtccaccaacaacatcctgtcgccggccaacggtgagccgatcatc
gtgccgtcgcaggacgtggtgttgggtctgtactacatgagccgtgccctggagaacaag
aagggcgaaggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgc
gtggtcgaactgcacgccaaggtcaaggtgcgcatcactcaggtggacgtggaagccggc
ggcaagcgcagtagcggcacctcgatcgtggataccacggtcggtcgtgcgctgctgagc
gaaatcctgcctgaaggcctgccgttccagctggccaacaccgagatgaccaagaagaac
atctcgcgcctgatcaactccagctaccgtctgctgggcttaaaggacaccgtcgtgttc
gccgacaagctgatgtacaccggctacgcctacgcgacccgcgccggcgtgtcgatcggt
atcgacgacatgctgatccccgacgagaagaagggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggtctggtcaccgccggcgagcgctacaac
aaggtcgtggacatctggtcgcggaccagcgagcgcatcgccaaggcgatgatggacacc
atcggtaccgaaaaggtcgagaacgccaagggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcccgtggtagccaggcgcagatccgtcagctg
gccggtatgcgcggcctgatggcgcgcccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggcttgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagacggcgaactccggttacctgacccgccgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaaatcgattgcggcaccactgaagggttg
atcatgaccccgatcgtggaaggcggcgacgtggtcgagccgttgcgcgagcgcgtgctg
ggccgcgtggtggccgaggacgtgtacctgccgggcaacgacgaagagccgatcgtcacc
cgcaacacgctgctcgacgaagcctgggtggccaagctcgaagacgccagcgtgcagtcg
gtgaaggtgcgttcgaccatcagctgcgaatcctcgttcggcgtgtgcgcacgctgctac
ggccgcgatctcgcacgtggtcaccaggtcaacatcggcgaagcggtcggcgtcatcgct
gcgcagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcggctgcggtggacaacatcaccgtcaagaccaccggttcggtcaag
ttcaacaacctcaagtcggtggcgcatgccagcggttcgctggttgcggtctcgcgttct
ggcgaactgtccgtgctcgatggccatggccgcgagcgcgagcgttacaagctgccgtac
ggcgcgaccatcaccgccaaagacggcgatgcggtcaaggccgggcagagcgttgccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgagctgaccggtctggcgtcgcgc
gaaatcaccgacccgaagcgtcgcggcgcacaggccaaggagctgcgtccgatcgtgcgc
atcgtcgatgccaagggcaacgacctgacgattccgaacacggatctgccggcccagtac
ctgttgccgccgcgttccatcgtcaacctgcaggacggcgctgccgtcggcgtgggcgac
gtggttgccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgttgccgacttgttcgaagcacgcaagccgaaggacccggcgatcctggcagaacgc
tcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaaggat
accgatggttcggaacacgaagagctgattcccaagtaccgccagatcatcgtgttcgaa
ggcgaacacgtgaccaagggcgagaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgcctgctgggtgtcgaaccgctggccgcttatctggtcaaggaaatccaggacgtg
tatcgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcactcgccagatg
ctgcgtaaggtcgagatcgttgatcagggcaacagcaagttcctcaacggcgagcaggtc
gagcgccagcgcgtcatcgaggaaaatgcccgcctggtcaagcgcaacgaactgccggcc
aagtacgatccggtgttgctgggtatcaccaaggcatcgctggccaccgagtcgttcatc
tcggcggcatcgttccaggagaccacccgcgtgttgaccgaggcagccgtgcgcggcacc
cgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgatcccggccggt
acgggtctggcgtaccacgccggacgtcgcaaggcctcaggtctgaccgactcggaaatg
gaaacgctgtcgggcaagccggcagtcgccgaaccggtcgccgcagtggccgacgctggc
gcggacgaggagtaa
DBGET
integrated database retrieval system
