Xanthomonas phaseoli: XppCFBP6546_12080
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Entry
XppCFBP6546_12080 CDS
T05156
Symbol
recB, XppCFBP6546P_12080
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xph
Xanthomonas phaseoli
Pathway
xph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XppCFBP6546_12080 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xph03400
]
XppCFBP6546_12080 (recB)
Enzymes [BR:
xph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XppCFBP6546_12080 (recB)
DNA repair and recombination proteins [BR:
xph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XppCFBP6546_12080 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATS30416
UniProt:
A0AB38DV75
LinkDB
All DBs
Position
complement(4997421..5001407)
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AA seq
1328 aa
AA seq
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MSVDSVTDPYLQLPLHGVRLIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAA
TQELRRRIRERLVLAASLVPDAPSLVVAAAQAATDLADDPSQPGPLLHAPPDVLLTRAIL
VTHLAGGSETPAALRRRLQQAVEEIDLAAVFTIHGFCARVLREHALESGQAFAAPELLAN
DRQLLGEVAADLWRQRAADAVMAEDLIALWSGGPEALASDLRTLVRHPTLLPAVATTTDD
APALSQAVHAAANALADAFNTHGTAFFEAIMSAIEGGILSKVSYKPEWLASLWQWFESFA
AAPSSNTAPHAKLLKLTAAELAAGTNKKFLDRTPSSPMSHQIDGYLTALAHVEAWRSRRR
IALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGAQADALVKRLRTQYAIALVD
EFQDTDDRQWSIFSNVFGEGPLAQAAGLEPALFLIGDPKQAIYGFRGGDVRTYLAAAMTA
ELAPPLSHNFRSRPGVLAAIDALYAQAGYTNAFLTDGIAFHPVRAGTKRVDEDLQRDGVA
APALTLWRAPEPPPPAKGKPRPWSAGRARELATAACVAAIRGWLAAARDGTATVCGRPVQ
AGDIAVLVRSHGEATRIQQALGAVGIPAVAAGKQSLFATEQALEVLALLQALLDPGDDSR
LRAALATVLIGEDAIAIAALERDGERHRRWQQQALDWRERWQRGGPLALLGELGATHGQR
LLALVDGERRLTNYLQLAELLQEADARALGPHGLVDWLARRIANADDNDETQQLRLESDA
RRVQIVTLHKSKGLEYPLVFLPYVGIGRSDKGAGRHCVVHAPDLGRQLHWKTERDDPSWS
AAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALSGMLRALDALQGAAGE
GTVVVDTSTPPAHLPRLPAPSEAQVPPARSAQRHIAPEWWVYSFTQLANADAGAVTDPMA
SATVVGSGGSDEPSGSEAVAVAVASDAEPFDPRFAGNRFGVVMHDVFERCDFAAWQAWRP
GQPAPDGQAAPILEALQRGGYAQDDLDDGLRMLTALIGHTLTVALPEGTRLADVPEPQRR
NEMEFHFAMRPTRVDALLALLHRFGVVGDRQAFGARQRLEGLMTGLIDLTYSVDGRWYVL
DYKSNRLPSYDADALARAMAHSEYELQALIYTVALHRWLRFRLGDAYDYARDFGGVRYLF
CRGLDAGRPAEGAGSEAVAEIPGHSIAGQRTSAPTRDSTGHRPDSAPNAGATTAGVPGAP
LGDPAPGIHAWRFEPALVHAVDALFAGKPADALSNDAPAQGAAHDPEPLSPRETGWGEGT
SAPGTPTP
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgactccgtcaccgacccatacctgcagttgccgctgcacggcgtgcgcctg
atcgaggccagcgccggcaccggcaagacctttacgctggccacgctgttcacccggctg
gtggtcgaacgcggcttgcgcatcggccagatcctcgcggtgaccttcaccgaagccgcc
acccaggagctgcgccgccgcatccgcgaacgcctggtgctggccgcaagcctggtcccc
gatgcgccatcgcttgtcgtagcagcggcccaggccgcgaccgacctcgccgacgacccg
tcgcagccaggtccgctcctacacgccccccccgacgtgctgctcacccgcgccatcctg
gtcacgcacctggccggcggcagcgaaacgcccgccgccttgcgtcgccgcctgcagcag
gcggtggaagaaatcgatctggccgcggtgttcaccatccacggcttttgtgcgcgcgtg
ctgcgcgagcacgcgctggaaagcggccaggcgttcgctgcgccggaattgctcgccaac
gatcgccaattgctcggtgaagtcgcggccgacctgtggcggcaacgcgccgccgatgcg
gtgatggccgaagatctcatcgcgctgtggtcgggtggccccgaggccttggccagcgat
ctgcgcacgttggtgcggcatccgacgctgttgccggcagtcgccacgaccaccgacgat
gcgcccgccttgtcgcaggccgtgcacgcggcggccaacgcactggctgacgcattcaac
acgcatggcaccgcatttttcgaggccatcatgtcggccatcgagggcggcatcctgagc
aaggtcagctacaagccggaatggctggcatcgctgtggcagtggttcgaaagcttcgct
gccgcgccatcgtccaacaccgcgccacacgccaaactgctcaagttgaccgcggcggaa
ctggccgccggcaccaacaagaagtttctcgatcgcacgccgtcttcgccgatgagccac
cagatcgatggctatctcaccgcgctggcgcacgtcgaagcgtggcgcagccggcgccgt
atcgccctgctgcacgcgctgcgcgacgatgccatcgcacggctggcgctgctcaagcgg
caacgccgcgtgcagacctacgacgacctggtcgatggggtcgcgcacgcattgcaaggc
gcacaggccgacgccttggtcaaacgcctgcgcacgcaatacgccatcgcgctggtggac
gaattccaggacaccgacgaccgtcagtggtcgatcttttccaacgtgttcggcgaaggc
ccgctcgcacaagcagcagggctggaaccggcgctgtttctgatcggcgaccccaagcag
gccatctacggcttccgtggcggcgatgtgcgcacctatctggccgctgcaatgaccgcc
gaactggcgccgccgctgagccacaatttccgctcgcgcccgggcgtactggccgccatc
gacgcgctctacgcgcaggccggctacaccaatgccttcctcaccgacggcatcgccttc
cacccggtgcgggccgggaccaagcgggtggatgaagacctgcaacgcgatggcgtcgct
gcgccggcgttgacgctgtggcgcgcgccggaaccgccgccgcctgcgaaaggcaagccc
aggccctggagcgccggccgcgcgcgcgagctggccaccgccgcctgcgttgccgcgatt
cgcggctggttggccgctgcccgcgacggcacggccacggtgtgcggacgcccggtgcag
gccggcgatatcgccgtgctggtgcgcagccacggcgaggccacgcgcatccagcaggcg
ctcggcgcggtgggcatcccggcggtggccgccggcaagcaaagcctgttcgccaccgaa
caggcgctggaagtgcttgccttgctgcaggccttgctcgacccgggcgacgacagccgc
ctgcgcgccgccttggccacggtgttgatcggcgaagacgccatcgccattgccgcactt
gagcgcgacggcgagcgtcaccgccgctggcagcaacaggcgctggactggcgcgaacgc
tggcagcgcggtggcccgctcgccctgctcggcgagctcggcgccacgcacgggcaacgc
ctgctcgccttggtcgatggcgagcgccgcctcaccaactatctgcaactggccgaactg
ctgcaggaagccgacgcgcgcgcgctcggcccgcatggcctggtcgactggctggcgcgg
cgcatcgccaatgccgacgacaacgacgaaacccagcaattgcggctggaatcggacgcg
cgccgcgtgcagatcgtcaccctgcacaagagcaagggcctggaatatccgctggtgttc
ctgccgtatgtcggcatcggccgcagcgacaagggcgccggccgccattgcgtggtgcat
gcgccggacctgggccgtcagctgcactggaagacagagcgcgacgacccgagctggagc
gccgccgaagctgcctggaagcaggaacaacgcgccgaagatgcgcgcctgctgtatgtc
ggtctcacccgcgccgagcacgcgctgtggatcgccagcggcccgttccatcagcacgaa
cgcaccgcgttgtcgggcatgttgcgtgcgctcgatgcgctgcagggcgcggcgggcgag
ggcaccgtggtggtggacaccagtaccccgccggcccacctgccgcggctgccggcgccg
agcgaggcgcaggtgccgcccgcgcgcagcgcgcaacggcacatcgctccggaatggtgg
gtgtacagcttcactcaactggccaacgccgacgccggcgcggtcaccgacccgatggcc
agcgccaccgtcgtcggcagcggcggcagcgatgaaccgtccggcagcgaggcggttgcc
gtggccgttgccagcgacgccgaaccgttcgatccccgcttcgccggcaaccgcttcggc
gtggtgatgcacgacgtgttcgaacgttgcgacttcgccgcctggcaggcctggcggccg
ggccaacctgcgcctgacggccaggccgcacccatcctcgaggccctgcaacgcggcggc
tacgcccaggacgacctcgacgacggcctgcgcatgctcaccgcgctgatcggccacacg
ctcaccgtggccttgcccgaaggcacccgcctggccgacgtgcccgaaccgcagcgccgc
aacgaaatggaattccatttcgccatgcggcccacccgtgtcgatgcgttgctggccctg
ctgcatcggtttggcgtggtcggcgaccgccaggccttcggcgcgcgccagcgcctggaa
ggcctgatgaccggcctgatcgacctcacctacagcgtggacgggcgctggtatgtgctg
gactacaaatccaaccgactgcccagctacgacgccgacgccctggcgcgggccatggcg
cacagcgagtacgaactgcaggcgctgatctacaccgtggcgttgcaccgctggctgcgc
ttccgcctgggcgacgcctacgactacgcccgcgacttcggcggcgtgcgctatctgttc
tgtcgcggcctggatgccgggcgccccgcggagggtgccgggtcggaagccgttgccgaa
atccctggccattccatcgcgggccagcgcacgtccgcacccacgcgcgattccaccggc
cacaggcccgactccgctccgaacgccggcgccacgaccgccggcgttccgggcgcgccg
cttggcgatccggcaccgggcatccacgcctggcgcttcgaaccagcgctggtgcacgcc
gtggacgccttgttcgccggcaagcctgcagatgcgctgtccaatgacgcgccagcgcaa
ggtgccgcccacgaccctgagcccctctccccccgtgagacgggctggggtgagggtacg
tccgcaccagggacacccaccccatga
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