Xanthomonas phaseoli: XppCFBP6546_14695
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Entry
XppCFBP6546_14695 CDS
T05156
Symbol
XppCFBP6546P_14695
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xph
Xanthomonas phaseoli
Brite
KEGG Orthology (KO) [BR:
xph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xph03016
]
XppCFBP6546_14695 (XppCFBP6546P_14695)
Enzymes [BR:
xph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
XppCFBP6546_14695 (XppCFBP6546P_14695)
Transfer RNA biogenesis [BR:
xph03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
XppCFBP6546_14695 (XppCFBP6546P_14695)
Prokaryotic type
tRNA splicing ligases
XppCFBP6546_14695 (XppCFBP6546P_14695)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
ATS30803
UniProt:
A0AB38E555
LinkDB
All DBs
Position
4409995..4411218
Genome browser
AA seq
407 aa
AA seq
DB search
MSTSQHFEFLHAEGSSTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLGKG
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRANDLPDSLAQLRSSIERSVPVGNGRG
GEHRKLPDSIQTRIAQSGLVQRLDAIKQQHKRIRTDKLDCQIGTLGGGNHFIEICLDETD
AVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
SWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGA
VSARAGELGIIPGSMGTRSHIVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHREAT
AHVECRKDAAVIDESPAAYKSIDAVMAAQRDLVEVLHTLRQVVCIKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatcacaacactttgaatttctgcacgccgaaggcagcagcaccccgatcaag
ggctgggtacgcggcgtgccgctggaagagcaggcgcatgcgcagctgcgcaatatcgca
gcggtcccgtttgtcggtccgtgggtcgcggtgatgccagacgtgcatctgggcaaaggc
gcaaccgtgggctcggtgattccgacccgtggcgccatcatcccggcggcggtcggcgtg
gatatcggctgcggcatggcggcggtgcgcaccacgctgcgcgccaacgacctgcccgac
agtctggcgcagctgcgttccagcatcgagcgcagcgtgccggtgggcaacggccgtggc
ggcgagcaccgcaagctgccggacagcatccagacccgcatcgcgcagtccgggctggtg
cagcgtctggacgccatcaagcagcagcacaagcgcatccggaccgacaagctggactgc
cagatcggcacgctgggtggcggcaaccatttcatcgagatctgcctggacgaaaccgat
gcggtctgggtgatgctgcacagcggttcgcgcggcaccggcaacctgatcggcacgtat
ttcatcgagcgcgcgcgtgagcaactggcgcatcgcgtattgggttttcatctgcccgac
aaggacctggccttcttcatgcagggcgagcctttgttcgacgagtatgtcgaagcggtg
tcgtgggcgcaggattacgcccgcgaaaatcgcgaggcgatgatggcgcgcgtgctggcc
gagatgcgtcaccgcttgcccaaattccagctggaaaagctcgcagtcaattgccaccac
aactatgtgcaaaaggaaacgcacggtggcgaggaattgttgatcacccgcaagggcgcg
gtcagcgctcgtgccggcgagctgggcatcattccgggcagcatgggcacgcgcagccac
attgtgcgcgggttgggcaacgccgacagtttccacagctgcagccacggcgcagggcgc
gtgatgagcaggaccgctgcacgcgcgcaaatcaccctggcacagcatcgcgaggccacc
gcacatgtggaatgccgcaaggacgcggcagtgatcgacgagtcgcctgccgcgtacaag
tccatcgatgcagtgatggcggcgcagcgggatctggtcgaggtgctgcacaccttgcgc
caggtggtgtgcatcaagggatag
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