Xanthomonas phaseoli: XppCFBP6546_16265
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Entry
XppCFBP6546_16265 CDS
T05156
Symbol
XppCFBP6546P_16265
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xph
Xanthomonas phaseoli
Pathway
xph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XppCFBP6546_16265 (XppCFBP6546P_16265)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xph03019
]
XppCFBP6546_16265 (XppCFBP6546P_16265)
Enzymes [BR:
xph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XppCFBP6546_16265 (XppCFBP6546P_16265)
Messenger RNA biogenesis [BR:
xph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XppCFBP6546_16265 (XppCFBP6546P_16265)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
ATS31063
UniProt:
A0AB38E7F8
LinkDB
All DBs
Position
4080993..4082381
Genome browser
AA seq
462 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGERAPRKSHARRPHGDAPRQAHA
HAGPKKPGSQRSGGPRQANAGAGAGRRDGGRGGNGRPANRGA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tacgaaacccccaccccgatccagcagcaggcgatcccgttggtgctggccggtcacgac
ctgctggccggcgcgcagaccggcaccggcaagaccgccgccttcggcctgccgctgctg
cagcacctgggcaccgcgccgcagaccgtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgaactggccacccaggtacacgacagcctgcgcggctacagcaag
tacctgcgcatccccagcgcggtgatctatggcggcgtgggcatgggcaaccagctcgat
gcgctgcgtcgtggcgtggacctgctgatcgcctgcccgggccgcctgatcgaccatatc
gagcgtcgcagcgtggacctgtccggcatcgaggtgctgatcctggacgaagccgatcgc
atgctcgacatgggcttcttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgccagaccctgctgttctcggcaaccttcgaagagaacatcaagcagctggcgctg
gagttcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgacggcgcgcgcaagcgcgatctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtgtttgcgcgtaccaagcacggcagcgac
aagctggcactgtttttggagaagtccggcatcaagaccgcggcgatccatggcaacaag
agccagggccagcgcatgcgcgcgctgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgatatcgccgcgcgcgggatcgatatcgatcagctgccgaaggtcatcaac
tacgacctgccgatggtggccgaagactacgtgcaccgcatcggccgcaccggccgtaac
ggctccaccggcgaggcgatctcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgatgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgctggggcaacagcgcgccgggtcgtgccgagcagccgggtggcgagcgc
gccccgcgcaagagccacgcccgtcgtccgcacggcgatgcaccgcgtcaggcgcatgcg
catgccggcccgaagaagccgggcagccagcgcagtggcgggccgcgtcaggccaacgct
ggcgcgggtgcaggccgccgcgatggtggacgtggcggcaatggccgtccggccaaccgc
ggcgcctga
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