Xanthomonas phaseoli: XppCFBP6546_20130
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Entry
XppCFBP6546_20130 CDS
T05156
Symbol
recJ, XppCFBP6546P_20130
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xph
Xanthomonas phaseoli
Pathway
xph03410
Base excision repair
xph03430
Mismatch repair
xph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XppCFBP6546_20130 (recJ)
03430 Mismatch repair
XppCFBP6546_20130 (recJ)
03440 Homologous recombination
XppCFBP6546_20130 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xph03400
]
XppCFBP6546_20130 (recJ)
DNA repair and recombination proteins [BR:
xph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
XppCFBP6546_20130 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
XppCFBP6546_20130 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XppCFBP6546_20130 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ATS31684
UniProt:
A0AB38DVT9
LinkDB
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Position
complement(3194662..3196401)
Genome browser
AA seq
579 aa
AA seq
DB search
MTSPPRIVRRPAGQAGSWPETMLPLLRRIYAARGVTDAQGAQPRLAQLLSPELLHNSGVA
AELLADAIAQQRRILVVGDFDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPA
LVDELAALQPDVLVTVDHGIACHAGVAAAKARGWTVLVTDHHLPGEALPPADAIVDPNLA
EDTFPSKTLAGVGVIFYVLLALRKVLRARGAFAERAEPDLPVLLDLVAVGTVADLVPLDT
NNRALVSAGLRRLREGKGCIGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMAL
GIELLLSEDWSQAREIAGTLEEINAERRAVQQLMTDDAEHAVAKVVLDGDGALPIAACLF
DAEWHPGVIGLVASKLKDRLHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARH
PGLIQKFGGHAMAAGLSIEHAALATFEQAFQAQVTAMVDASLLHAQLHSDGELAAHELDH
LHAEALRVAGPWGQGFPEPLFDGQFEVLQHRVLKERHLKLTLRCPGRAEPLNAIQFNGWR
GSDPARLVRLAYRLVADDYRGGTAVQLIVEHCEPATVTD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgcctccacggatcgtccggcgccccgccgggcaggccggcagttggcccgag
accatgttgccgctgctgcgccgcatctatgcagcgcgtggtgtcaccgatgcgcaaggc
gcgcagccgcgactggcccagttgttgtcgccggaattgctgcacaacagcggcgtggcc
gccgagctattggccgatgcgatcgcgcagcaacggcgcatcctggtggtgggcgatttc
gactgcgatggcgccactgcctgcgccgtcggcgtgcgtggcttgcgcatgctcggcgcg
ctggatgtgcaccacgccgtgcccaatcgcatggtgcatggctatggcttgtcgcctgcg
ttggtcgacgaactggcagcgttgcagccggatgtgctggtcaccgtcgatcacggcatc
gcctgtcacgccggcgtggccgcagccaaggcgcgcggctggacggtgctggtcaccgac
caccatctgccgggcgaggcgctgccgccggccgatgcgatcgtcgacccgaacctggcc
gaagacaccttccccagcaagaccctggccggggtcggggtgatcttctatgtgttgctg
gcgctgcggaaagtgttgcgcgcgcgcggcgcctttgccgagcgcgccgagcctgacctg
ccggtgctgctggatctggtcgcagtcggtaccgttgccgatctggtaccgctggatacc
aacaaccgtgcgctggtgtcggccggattgcgtcgcctgcgcgagggcaagggctgcatc
gggttgcgtgccttgatcgatgccagcggccgcgatgtggcgcgtctgagcgccagcgat
atcgggtttgcgctcgggccgcgcctcaatgcggccggtcggctcgaggacatggcgctg
ggtatcgaactgttgctcagtgaagactggagccaggcccgcgagatcgccggcacgttg
gaagagatcaacgccgaacgccgcgcggtgcagcagttgatgaccgacgatgccgagcac
gctgtcgccaaggtggtgctggatggcgatggcgcattgccgatcgccgcatgcctgttc
gatgccgaatggcacccgggcgtgatcggcctggtggcctccaaactcaaggaccgcctg
caccgtccggtgatcgcgctggcgccggccgagccgggcagcagccagttgcgtggctcg
gcgcgctcgattcccggcctgcatatccgcgatgtgctggcggcggtggatgcgcggcat
cccggattgatccagaagttcggcggccatgcgatggcagccggcttgagtatcgagcat
gcggcattggccacgttcgagcaggccttccaggcgcaggtgacggcgatggtggatgcc
tcgctgctgcatgcccaattgcacagcgacggcgaactggccgcgcacgaactcgatcac
ctgcatgccgaagcgctgcgcgtggccggtccgtgggggcagggcttccccgagccgctg
ttcgatggtcagttcgaggtgctgcagcaccgcgtgctcaaggaacgccacctcaagttg
accctgcggtgccccggacgcgcggaaccgctcaatgccatccagttcaatggctggcgc
ggcagcgaccccgcgcgcctggtgcggcttgcgtatcggttggtggccgacgactaccgc
ggcggcacggcggtgcagttgatcgtcgagcattgcgagccggcgacagtcaccgactga
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