Xenorhabdus poinarii: XPG1_1309
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Entry
XPG1_1309 CDS
T03805
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xpo
Xenorhabdus poinarii
Pathway
xpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XPG1_1309 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xpo03019
]
XPG1_1309 (rne)
03009 Ribosome biogenesis [BR:
xpo03009
]
XPG1_1309 (rne)
Enzymes [BR:
xpo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XPG1_1309 (rne)
Messenger RNA biogenesis [BR:
xpo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XPG1_1309 (rne)
Ribosome biogenesis [BR:
xpo03009
]
Prokaryotic type
rRNA processing factors
XPG1_1309 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CDG20964
UniProt:
A0A068R1N7
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Position
complement(1294818..1298063)
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AA seq
1081 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIEGPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSHGRPNIKDILKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRIELKEALSSLEVPEGMGLIVRTAGVGKSAESL
QGDLNFRLKHWEAIKKVADSHPSPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
RQHITALGRPDFASKIKLYNGEVPLFSHYQIESQIESAFQREVRLPSGGSVVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTHQIHAIVPTQIASYLLNEKRKAVSEIEHRQGGVGVVIVPNDQME
TPHFSVLRVRKGEEISTLSYNLPKLYEVEMATVQDDGQHERKRPEQPAISTFELSTEATA
SASETAIAKTKEKKAAVNNQKQTEKPGLFSRFFSALKKMFSSEEETQPQEKNKKSSGNEN
RRYPERRGPRRQNQRRERNENETRNNREREEQRKGRHSQQKNPVQDNTVIDNEAREAQQQ
QRREQRVERQRRRQEEKRQQQLEAKTQQTENQPNIVEEVVEERQPVMPRRQRRQLEQKIR
ITDAVKPETTVATLPAALPELVSESSHKETNVSVAAVIETKIEATRQSEIPQDTVAPDVT
SHATAPQNNEQQDTTMPRRSRRSPRHLRVSGQRRRRYRDERNLTQSPVPLEMAVVSPELA
SGKVWVRYPVTPVTVTESETQAPVDVMNKAVEEKTAPVHQEQVVLEPSIAEATAPHIELV
EQQDATTNHDLAKTDDVSSVVSVEPALAPSQVAVSESVPSINHERKQQSEVLEVLSDTES
HSLVSCNAKETPLTAEPITVTPIVEPEYHEEQPTVSTEIRAKAEDAKTEETKVVKSSIIL
EKYRHAYSPMTKAPAPDLASESVVITEWLRPDYPFKGKGGAGGHSATSVAISAMFKPQSH
E
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaacccaacaggaagagttgcgtgttgcccttgttgat
gggcaacgtctttatgatttggatattgaaggtccaggacacgaacaaaaaaaggccaat
atatataaaggtaaaattacacgaattgaacctagcctagaagccgcttttgttgattat
ggtgcggaacgtcatggcttcctacccattaaagaaattgctcgcgaatattttccaagt
aattatcattcccacggtcgtcctaacattaaggatatccttaaagaaggtcaggaagtc
atcgttcaagttgataaagaggaacgcggcaacaaaggtgcagccttaacaacgtttatc
agtttggcaggtagctatctggttctgatgccaaataacccaagagcaggcggaatttct
cgccgcattgagggagatgatcgcatcgaattaaaggaagccctttcttcccttgaagtt
cctgaaggtatggggttgattgttcgtactgccggtgtaggcaaatcagctgaatcctta
caaggcgatttaaacttccgtctgaaacattgggaagcaatcaaaaaagtggcagacagc
cacccctccccattcctgatccatcaggaaagcaatgttatcgtacgcgcattccgtgat
tatctgcgtcccgatattggggaaattttaattgataatcctaaaattttagacctggca
cgtcagcacatcaccgctctggggcgtcctgattttgccagcaaaattaaactgtataac
ggcgaagttcctctgtttagccattatcaaatcgaatctcaaatcgaatccgccttccag
cgtgaagttcgtttgccttccggtggttccgtcgtcatcgatacaacggaagcgttaacc
gcgattgatatcaactcatcccgttcaacccgtggtggtgatattgaagaaaccgccttt
aacaccaacctggaggccgcagatgaaattgcccgtcaattgcgtctacgtgatctgggt
ggtcttattgttatcgattttattgacatgacgccggtgcgccatcaacgtgaagtggaa
aaccggttgcgtgatgctgtacgtcaggatcgtgcccgtattcaaattggccggatatcc
cgttttggcctactcgaaatgtcacgtcagcgtttaagcccatctcttggcgaatccagt
caccatgtttgtccccgttgtagcggcaccggcaccatccgagataacgaatcactgtct
ctctctattctgcgcttaatcgaagaagaagcactgaaagaaaacacccatcagattcac
gccattgttcctacgcagattgcttcctatttactgaatgaaaaacgcaaagcagtcagt
gagattgagcatcgtcaaggcggtgttggtgtggtcattgttccaaacgatcaaatggaa
acgccacacttctctgtgttacgtgtgcgtaaaggcgaagaaatttcaacgctgagttat
aacctgccaaaactgtatgaagtagagatggcaacggttcaggatgatggtcagcatgaa
cgcaaacgtccagaacaacccgctatttcaacgtttgagctatctacagaagcaacagca
tctgcctcggaaacagcaatagccaaaacaaaagagaaaaaagccgcggttaataatcag
aaacaaactgaaaaaccaggtttattcagccgtttcttcagcgccttgaaaaaaatgttc
agtagtgaggaagaaacacaacctcaagaaaagaacaaaaaatcgtctggcaatgagaac
cgtcgttatccagaacgtcgcggcccacgccgtcaaaatcagcgtcgtgaacgtaacgaa
aatgaaacacgcaataaccgtgagcgtgaggaacaacgcaagggtcgtcatagccagcag
aaaaatcctgttcaagataacacggtgatcgataatgaagcgcgtgaagcacagcaacaa
caacgccgtgaacaacgcgttgagcgtcaacgtcgtcgccaggaagaaaaacgtcagcaa
caactggaagcgaaaactcagcaaacggaaaatcaacccaatatcgtcgaagaagtggtt
gaagaacgtcaacctgtcatgcctcgtcgtcagcgccgccagcttgagcagaaaatccgt
atcactgacgcagtgaagccagaaaccaccgttgcaaccctacctgccgcactacctgaa
ttggtatcagaaagcagtcacaaagaaacaaacgtgtccgtggccgctgtcattgagacg
aagattgaagcaactcgtcaatctgaaataccacaagatacggttgcaccggatgttact
tcacacgctactgcgccacagaacaatgagcagcaagacaccacgatgcctcgtcgttcc
cgccgttctccacgccatcttcgggtcagcggtcagcgtcgtcgtcgctatcgtgatgaa
cgcaacctgactcaatctccagtccctttggaaatggctgtcgtatcaccggaattagcg
tcgggcaaagtgtgggttcgctatccagttacccccgtgaccgtgacagaatcagaaacg
caggcacctgtggatgtcatgaacaaggcagttgaagaaaaaaccgcccctgtacaccag
gaacaagtcgttctggagccatcaatcgcagaggcgacagcacctcatattgagttggta
gagcaacaagacgctaccaccaatcatgatcttgctaaaactgatgacgtttccagcgtg
gtatcagtagagccagcattagcaccgtctcaggttgcggtatcggagagcgtgccatct
atcaaccatgagagaaaacaacaatcagaagttttagaagttttaagtgatacagagtca
catagcctggtttcgtgtaatgctaaagagacaccgcttacagcagaacccattactgtg
acgccgattgttgaaccggaatatcatgaagaacaacctactgtcagcacagaaatacgt
gctaaggcagaagacgctaaaacggaagagacaaaagtggttaagtcttcgattatcctg
gaaaaatatcgtcacgcttattccccaatgacaaaggctcccgcacccgatctggcgtcg
gaatctgttgttatcaccgaatggctacgtcctgactatccgttcaaaggcaaagggggt
gccggtggtcattctgcaacaagcgttgcgatttcagctatgtttaaaccgcagtcacac
gaatga
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