Xenorhabdus poinarii: XPG1_1340
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Entry
XPG1_1340 CDS
T03805
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xpo
Xenorhabdus poinarii
Pathway
xpo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XPG1_1340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xpo03400
]
XPG1_1340 (mfd)
Enzymes [BR:
xpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XPG1_1340 (mfd)
DNA repair and recombination proteins [BR:
xpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XPG1_1340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CDG20995
UniProt:
A0A068R4D6
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All DBs
Position
complement(1328639..1332082)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSAKYRYQLPERRGDSRHLGHLMGAACAVECAEIIERHSGPILLVTKDMQNALRLRDEIQ
QFTSAPINLMSDWETLPYDSFSPHQEIISNRLSTLYHLPFMTKGVFILPVNTLMQRVCPH
EYLKGHALVMHKGQHLSRDKLRAELEQAGYRNVDQVLEHGEFATRGALLDLFPMGSEQPY
RIDFFDDEIDSVRTFDVDTQRTLAEVEKINLLPAHEFPIDQDAIELFRSQWREQFEVRRD
SEHIYQQVSKKILPAGIEYWQPLFFKQPLPSIFEYLPQNTLLITQRLVSATERFWQDVVQ
RFESRKVDTMRPLLAPEQLWLPVNQLFSELKNWPRIEVDHETLPQKAKNTNLAYQPLPDL
SIVAQQKMPLDKLSRFITQFSGKIVFSVESEGRRESVQELLSRINIHPKTIKQLADADSP
GHYLMVGAADQGFIDDDNQLAFIGESDLLGERVSRRRQDNRRTINADTLIRNLAELRHGQ
PVVHLEHGVGRYQGLTTLEAGGIKAEYLILTYAGDDKLYVPVSSLHLISRYAGGTEESAP
LHKLGGEAWSKARQKAAEKVRDVAAELLDVYAQRAVKPGFAFKRDHEQYQLFCQSFPFDT
TPDQEQTINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAISNNKQVAVLVPTTLL
AQQHYDNFRDRFANWPVHIEVMSRFRSAKEQQQVIELAGEGKVDIIIGTHKLLQSDLRWK
DLGLLIVDEEHRFGVRHKERIKAIRADVDVLTLTATPIPRTLNMAMSGMRDLSIIATPPA
RRLAVKTFVREYDSLVVRESILREILRGGQVYYLYNDIENIEKAKARLEELVPEARIVVG
HGQMRERDLERVMTDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTSDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
DQSGQIASIGFTLYMELLESAVDALKQGRELSLEDLTNQQTEIELRMPVLLPDDYIPDVN
MRLSFYKRIASAQDNAELDELKVELIDRFGSLPDAGRQLLQSASIRLMAQRFGIKRIEAN
EKGGFIEFSHHNKVDPNYLISLLQTQPNIYRLDGPSKLKFITELTERTTRLSFIQQLLEN
FDQHKFD
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaaaatatcgttatcaacttcctgaacgtcgcggtgatagccgccatctgggt
catttgatgggtgcggcttgtgccgttgaatgtgccgaaatcattgaacgtcactcaggg
ccaatactgctggtgaccaaagatatgcagaatgccctacgattgcgtgatgaaattcaa
caattcacctccgcgccaatcaacctcatgtcagattgggaaactttaccttacgatagc
ttttcgcctcaccaagaaatcatttccaatcgcctgtccacactttatcacttacccttt
atgacgaaaggggtattcattctccccgttaataccttaatgcaacgtgtctgcccacac
gagtatcttaaagggcatgctttggtcatgcacaagggacagcatctttcacgtgataaa
ctgcgggcagaattagaacaagcgggttatcgcaatgttgaccaagtccttgaacatggt
gagttcgccacgcgcggcgctttgttggatcttttcccgatgggcagtgaacagccttat
cgcattgattttttcgatgatgaaatagacagcgtgcgcacctttgatgtcgatactcaa
cgaacattggccgaagtggaaaaaatcaatttattgcccgctcatgagtttcccattgat
caggatgccattgagctctttcgcagccagtggcgtgaacagttcgaggtccgtcgtgat
tcagaacatatttatcagcaagtcagtaaaaagatcctcccggctggcattgaatattgg
caaccactgttctttaaacaaccgttgcctagcatttttgaatatcttccccaaaatacc
ttgctgattacccaacgtttagtcagtgcgacagagcgcttctggcaggatgtggtacaa
cgttttgaaagccgcaaagtggatactatgcggccgttactcgcacctgaacagctttgg
ttacctgttaatcaactcttttcagaactgaaaaactggcctcgtattgaagttgatcat
gaaacccttcctcaaaaagccaaaaataccaatctcgcctatcaacctctgccagattta
tcgatcgttgcgcagcaaaaaatgccactggataagttatcccgtttcatcacgcaattc
agtggcaagattgtgttttcagtcgaaagtgagggacgtcgggaatcagtacaagaatta
ctctcacgcatcaacatccatccgaaaaccatcaaacaattagccgatgccgatagccct
ggtcattatttgatggttggtgcggcggatcagggctttattgatgacgacaaccagctc
gcgtttatcggtgaaagtgacctgcttggcgaacgcgtcagccgtcgtcgtcaggataat
cggcgcactatcaatgccgacacgttaattcgcaatctcgcagaactccgccacggtcaa
cctgtcgttcaccttgagcatggcgttggacgttatcagggattgacaacgctggaagca
ggtggcatcaaagcagaatatcttatcctgacttatgccggggacgataaactgtatgtc
cccgtctcttccctgcatctcatcagccgttatgccgggggaacagaagaaagcgccccg
ctacacaagctcggtggagaagcatggagtaaagcacgccagaaagcagctgaaaaagtg
cgtgatgttgctgccgaactcttggatgtttacgcacaacgcgctgttaaacccggtttt
gcattcaaacgcgatcatgagcaataccaactgttctgtcagagttttccatttgataca
acacctgatcaagaacagacgatcaatgcagtacttgatgatatgtgccaacctattgcc
atggacagactggtctgcggcgatgtcgggtttggaaaaacagaagtggccatgcgggcg
gcatttctggccatcagtaacaataagcaagttgccgttcttgtgccaacaacgttattg
gcgcagcagcattatgataatttccgcgatcgctttgcaaactggcctgtacatattgaa
gtcatgtcacgttttcgtagtgccaaagagcagcaacaggtcattgagctggccggagaa
ggaaaagtggatatcattattggtactcacaaactactgcaaagtgatttgcgctggaaa
gatctcggcttattgatcgtcgatgaagaacatcgcttcggcgtccgccataaagaacga
attaaagcgattcgggctgatgtcgatgtactgacactgactgccaccccgatcccccga
acactcaatatggcaatgagtggtatgcgcgatctctccattatcgcgacgccgccggca
cgccgtttggcggtcaaaacgtttgtgcgtgaatatgatagccttgtggtacgtgaatcc
atcctgcgtgaaattttacgtggtggtcaggtttattatttgtataacgatattgaaaac
attgaaaaagcaaaagcccgcctggaagaattggttcccgaggccaggatcgttgtcggg
catgggcaaatgcgtgagcgtgatttagaacgcgttatgacggatttccatcaccaacgt
tttaatgtgctggtttgtaccacgattattgagacaggtattgatattcccagtgctaat
accatcattattgaacgcgcagatcactttggcttagcacaattgcatcaattacgtggc
cgtgtcgggcgatcccatcatcaggcttatgcttatttactgacaccccatccaaaagcc
atgaccagcgatgcacaaaaacgtctggaagccattgcatccctcgaagatctgggtgcc
ggtttcgcgctggcaactcacgatttggaaattaggggagcgggtgaattgctgggagaa
gaccaaagcggacaaatagccagcatcggcttcactctctatatggagttattggaaagc
gctgtcgatgcactcaagcaggggcgagaactttcgcttgaagatctcaccaaccaacag
actgagatagaattgcgtatgccggtgcttttgcctgatgattatattcccgatgttaat
atgcgtttgtctttctataaacgtatcgcaagtgctcaggataatgccgaattggatgaa
ctgaaagtggagctgattgaccgattcgggagtctgcccgatgcagggcgtcaattatta
caatcggcgtccatccgtctgatggctcaacgatttggtatcaaacggattgaagccaat
gaaaaagggggattcattgaatttagccatcacaataaagtcgatccaaactatctgatt
agcttgttacaaacgcaacccaatatttaccgattggatgggccatctaagttgaaattt
attactgaattaaccgaacggacgacccgtttatcttttattcagcaattattagaaaat
tttgatcaacacaaatttgattaa
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