Xenorhabdus poinarii: XPG1_1778
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Entry
XPG1_1778 CDS
T03805
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xpo
Xenorhabdus poinarii
Brite
KEGG Orthology (KO) [BR:
xpo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xpo03019
]
XPG1_1778 (hrpA)
Enzymes [BR:
xpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XPG1_1778 (hrpA)
Messenger RNA biogenesis [BR:
xpo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XPG1_1778 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
NACHT
PhoH
AAA_11
T2SSE
ABC_tran
TsaE
NTPase_1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
CDG21433
UniProt:
A0A068R2M0
LinkDB
All DBs
Position
complement(1751318..1755238)
Genome browser
AA seq
1306 aa
AA seq
DB search
MESSLTAPIAELFAELDHLPLRDQFRLRKRLHGAAKIKNQGALQAVAQTIAADITAAKQK
VRVREAACPAIQYPDALPVSQKKDDIYKAIRDNQVVIIAGETGSGKTTQIPKICLELGRG
VKGLIGHSQPRRLAARSVANRIADELETPLGSTVGYKVRFHDQVSENTLVKLMTDGILLV
ELQQDRLLLQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKIIITSATIDPERFSRH
FHHAPIIEVSGRTYPVEVRYRPVAGDDNDSDRDQLEAIIDAVDELGRESAGDILVFMSGE
REIRDTADALSKQNFPHTEILPLFARLSNSEQNRIFQSHVGRRIILATNVAETSLTVPGI
KYVIDTGFARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEDDFLSR
PAFTDPEILRTNLASVILQMTAIGLGDVSAFPFVEAPDKRNIQDGVRLLEELGAIDPESL
SAGTYRLTPMGRQLAQLPIDPRLARMVLEAKAHGCVREVMVITSALSIQDPRERPLEKQQ
ASDEKHRRFADKDSDFIAFLKLWDFLEEQQKALSSAQFRKLCRQDYLNYLRVREWQDIYT
QLRQVVKEIGLPINRQDADYRSIHLALLTGLLSHIGQKDTDKQEYTGARNARFSVFPGSG
LFKKPPKWGMVAELVETSRLWGRIAARIEPEWIEPLAAHLVKKHYSEPHWQKSQGAVMAT
EKVTLYGLPIVTGRLVNYSQIDPMLCRELFIRHALVEGDWQTRHSFFRANLKLREEVEEL
EHKSRRRDILVDDETLFSFYDQRIGKDVVSSRHFDRWWKVASQDQPELLNFEKSMLIKGD
ANNVSALDYPNYWYQDNLKFRLSYQFEPGTDADGVTVHIPLAVLNQVKNEGFDWQIPGIR
YELVVALIKSLPKPIRRNFVPAPNYAQAFLERVTQPQMPLLDSLEKELRRMTGVTVSRDD
WQWEQVPDHLKITFRIIAEKRTGEKNKPLAEGKDLSALKLQLKEKVQETLSAVADDGIEQ
RGLHIWSFGELPECYEQKRGGYSVKAFPALVDEKESIAIKLFETEAEQHNAMWQGTRRLL
LLNIPSPIKYLHEKLPNKSKLGLYFNPYGKVLDLIDDCIVCGVDKLIAKNGGLAWNEQTF
ACLQDNVRADLNDAVVEIAKQVEQILTTVFNINKRLKGRIDISLALALSDIKEQISGLVF
NGFVTSHGWKRLTDVLRYLNGIERRLEKLAVDPNKDRVHMSRIEHIQNQWQHWLAKLSLQ
QKQLPEVKEVRWMIEELRISLFAQQLGTAYPISDKRILQVMENIAS
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
gtggaatcatctttgacagcaccaatcgctgaattattcgctgaacttgatcacctacca
ctgcgcgatcagttccggttaagaaaacgtctgcatggagccgcaaaaattaagaatcag
ggcgctttgcaggctgtagcacaaaccattgctgcggatattactgctgcaaaacagaaa
gtccgggttcgtgaggccgcatgtcctgcgattcaataccctgacgctttaccggtcagt
cagaaaaaagacgatatttataaagcgatcagggataaccaggtggttatcattgccggg
gaaaccggttcaggtaagacgactcagatccctaaaatctgccttgaattgggacgaggg
gttaaggggctgattggccatagccaacctcgtcgtttggcggctcgttcagtggctaat
cgtattgcagacgaactggaaacgccccttggctcaacagtcggctataaagtgcgtttt
catgatcaggtcagtgaaaatacgttggtcaaattgatgactgacggtattttgttggta
gaattgcagcaagatcgtttgttattgcaatatgatacgttaattatcgatgaagcccat
gaacgcagtttgaatattgattttatcctcggttatctgcgtcagttactgccaaaacgc
cctgatctgaaaattattattacttctgcaaccattgatcctgaacgtttttctcgtcat
tttcatcatgcaccgattattgaagtttcagggcgtacttatcccgttgaagtgcgttat
cgtccggtggcgggagatgataatgacagtgatcgtgatcagctcgaagccattattgat
gcagtggatgagctaggacgtgaaagtgcgggcgacatcctggtgtttatgagtggtgag
cgagaaattcgtgatacggcagatgcgctgagtaaacaaaatttcccacataccgaaatt
ctgccactttttgcccggttatctaacagtgaacagaatcgaatttttcagtctcatgtt
gggcgccgtattattttggcaacgaacgtggcggaaacctcattgacagtccccggcatc
aaatacgtgatcgatacgggatttgcacgtattagccgctacagctatcgaaccaaagtg
caacgtttgccgatagagccaatatcacaagcctccgctaaccagcgaaaagggcgctgt
ggtcgtgtttcagacgggatttgtattcgtctttattcggaagatgattttttatctcgc
ccggcattcactgatcctgaaattctgcgcaccaatctggcttccgttattttacaaatg
actgctatcggattgggtgatgtcagtgcatttccgtttgttgaagcacctgataaacgc
aatattcaagatggagttcgtttattggaagagttgggggcaattgatcccgagtcgttg
tccgctggaacctatcgattgacgccaatgggacgacaactggctcaactgcctatcgat
ccccgtctggctcgtatggtgttggaagccaaggcgcatgggtgcgttcgtgaagtcatg
gttattacttccgcgctatcgattcaagatccacgcgaaaggccattggaaaagcagcaa
gcttcagatgaaaaacaccggcgttttgcggacaaggattcagacttcatcgcgttcttg
aaattgtgggattttctggaagaacagcaaaaagcgctttccagcgctcaattccgcaaa
ctttgccgtcaagattacctgaactatcttcgtgtgagagaatggcaggatatctacact
cagttgagacaagttgtaaaagaaataggtttgcccattaaccgtcaggacgctgattat
cgcagtattcaccttgccctgctgaccggattattatcccatattggccagaaagatacc
gataaacaggaatatacgggagcacgcaatgcgcgtttttctgttttccccggttccggt
ttatttaaaaaaccgcctaaatgggggatggttgctgaattagtggaaaccagccgcctg
tggggacggattgctgcccggatcgaaccggaatggatagagccgctggctgctcatctc
gtcaaaaaacactatagtgaaccacactggcagaagtctcagggcgcggtgatggcaact
gaaaaagtgaccttgtatggcttgcccattgtgacagggcgtctggttaattacagccaa
atcgatcctatgctgtgccgtgaattgtttatccgtcatgcgctggtggaaggggactgg
caaacccggcattcttttttccgtgctaatttgaaattgcgtgaagaagtcgaagaactg
gaacataaatctcgccgacgggatatcctggtggatgatgaaactttgttcagtttttat
gatcagcgaattggcaaagacgttgtttcatcacgtcattttgatcgctggtggaaagtg
gccagtcaagatcaaccggaattgcttaattttgaaaagagcatgttgatcaaaggtgat
gcaaacaacgtcagtgcgttggattatccgaattactggtatcaggataatttgaaattc
cgcttgagttaccaatttgagccgggaactgatgcggacggtgtgacggtgcatattcct
ttagcggtattgaatcaggttaagaatgaaggattcgattggcaaataccaggcattcgc
tatgaattggttgtggcgttgattaaatcactccccaaaccaatccgccgtaattttgtt
ccggcgcctaattatgcgcaagcctttctggagcgggtgacacaacctcagatgcctttg
ctggatagtcttgagaaagagttacgccgcatgacgggcgtgacagtgtcacgagatgac
tggcaatgggaacaagttcctgatcatctaaagatcacattccgtattattgctgaaaaa
agaacaggtgagaaaaacaaaccgttagcggaaggcaaggatctgtcagcattgaaactg
caattaaaagaaaaagttcaagaaaccctttcggcggttgcagacgatggcatagaacaa
cgtggattgcatatctggagctttggtgaattacctgaatgttatgagcagaaacgcgga
ggctattccgttaaggcatttccggcattggtggatgagaaagagagcattgcaattaaa
ttgttcgaaacagaagctgaacagcacaatgctatgtggcaaggaactcgtcggttgtta
ttgctgaatattccatcaccgattaaatacctgcatgaaaaattaccgaacaaatccaaa
cttgggctgtatttcaatccatatggcaaagtgttggatttgattgatgattgtattgtt
tgtggtgttgataagttgatcgcaaaaaatggggggctggcttggaatgaacaaacattt
gcttgcttgcaggataacgtgcgcgcggatttgaatgatgctgtggttgaaattgctaaa
caagtcgagcagatcctgacaacggtctttaatatcaacaagcgcttgaaagggcggatt
gatatctctcttgcactggcattatcggatattaaagaacaaatttctggcctggtcttc
aatggatttgtcacttcccatggttggaaacgtttgacggatgttctgcgttatttgaat
ggaattgagcggcgattggaaaaattggcagtagatcctaataaagatagggtacatatg
agccggattgagcatattcaaaaccaatggcaacactggctggcaaaactctctctccag
cagaagcaactgccggaagtgaaagaagtgcgttggatgattgaagagcttcggattagc
ttatttgcgcagcaattaggtaccgcataccccatatcagacaagcgtattttacaggta
atggaaaatatcgcatcgtga
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